Evidence map›Paper›PMID 30728468›Full record

ArticleThe ISME journal2019

Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere.

Stephanie A Carr, Sean P Jungbluth, Emiley A Eloe-Fadrosh, Ramunas Stepanauskas, Tanja Woyke, Michael S Rappé, Beth N Orcutt

Abstract read
In one paragraph

Article in The ISME journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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  7. Characterization of DsrD and its interaction with the DsrAB dissimilatory sulfite reductase.Protein science : a publication of the Protein Society · 2024
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  17. The DsrD functional marker protein is an allosteric activator of the DsrAB dissimilatory sulfite reductase.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Stephanie A CarrBigelow Laboratory for Ocean Sciences, 60 Bigelow Drive, East Boothbay, ME, 04544, USA.
Sean P JungbluthCenter for Dark Energy Biosphere Investigations, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0001-9265-8341
Emiley A Eloe-FadroshDepartment of Energy, Joint Genome Institute, Walnut Creek, CA, USA.
Ramunas StepanauskasBigelow Laboratory for Ocean Sciences, 60 Bigelow Drive, East Boothbay, ME, 04544, USA.ORCID http://orcid.org/0000-0003-4458-3108
Tanja WoykeDepartment of Energy, Joint Genome Institute, Walnut Creek, CA, USA.
Michael S RappéHawaii Institute of Marine Biology, University of Hawaii at Manoa, PO BOX 1346, Kaneohe, HI, 96744, USA. rappe@hawaii.edu.
Beth N OrcuttBigelow Laboratory for Ocean Sciences, 60 Bigelow Drive, East Boothbay, ME, 04544, USA. borcutt@bigelow.org.ORCID http://orcid.org/0000-0002-6233-3578

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The exploration of Earth's terrestrial subsurface biosphere has led to the discovery of several new archaeal lineages of evolutionary significance. Similarly, the deep subseafloor crustal biosphere also harbors many unique, uncultured archaeal taxa, including those belonging to Candidatus Hydrothermarchaeota, formerly known as Marine Benthic Group-E. Recently, Hydrothermarchaeota was identified as an abundant lineage of Juan de Fuca Ridge flank crustal fluids, suggesting its adaptation to this extreme environment. Through the investigation of single-cell and metagenome-assembled genomes, we provide insight into the lineage's evolutionary history and metabolic potential. Phylogenomic analysis reveals the Hydrothermarchaeota to be an early-branching archaeal phylum, branching between the superphylum DPANN, Euryarchaeota, and Asgard lineages. Hydrothermarchaeota genomes suggest a potential for dissimilative and assimilative carbon monoxide oxidation (carboxydotrophy), as well as sulfate and nitrate reduction. There is also a prevalence of chemotaxis and motility genes, indicating adaptive strategies for this nutrient-limited fluid-rock environment. These findings provide the first genomic interpretations of the Hydrothermarchaeota phylum and highlight the anoxic, hot, deep marine crustal biosphere as an important habitat for understanding the evolution of early life.

Indexed as

ArchaeaCarbon MonoxideEcosystemExtreme EnvironmentsGenomicsGeologic SedimentsMetagenomeNitratesPhylogenySulfatesCarbon MonoxideNitratesSulfates

Identifiers

PMID30728468
PMCPMC6775978

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.