Evidence map›Paper›PMID 30728409›Full record

ArticleScientific reports2019

Diversity of spotted fever group rickettsiae and their association with host ticks in Japan.

May June Thu, Yongjin Qiu, Keita Matsuno, Masahiro Kajihara, Akina Mori-Kajihara, Ryosuke Omori, Naota Monma, Kazuki Chiba, Junji Seto, Mutsuyo Gokuden and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 62 citations in OpenAlex.

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  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 2 countries.

May June ThuUnit of Risk Analysis and Management, Hokkaido University Research Center for Zoonosis Control, N 20 W 10, Kita-ku, Sapporo, 001-0020, Japan.
Yongjin QiuHokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, University of Zambia, P. O. Box 32379, Lusaka, Zambia.
Keita MatsunoLaboratory of Microbiology, Faculty of Veterinary Medicine, Graduate School of Infectious Diseases, Hokkaido University, N 18 W 9, Kita-ku, Sapporo, 060-0818, Japan.ORCID 0000-0002-4205-6526
Masahiro KajiharaDivision of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, N 20 W 10, Kita-ku, Sapporo, 001-0020, Japan.
Akina Mori-KajiharaDivision of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, N 20 W 10, Kita-ku, Sapporo, 001-0020, Japan.
Ryosuke OmoriDivision of Bioinformatics, Hokkaido University Research Center for Zoonosis Control, N 20 W 10, Kita-ku, Sapporo, 001-0020, Japan.
Naota MonmaDepartment of Infection Control, Fukushima Medical University, 1 Hikarigaoka, Fukushima, 960-1295, Japan.
Kazuki ChibaFukushima Institute for Public Health, 16-6 Mitouchi Houkida, Fukushima, 960-8560, Japan.
Junji SetoYamagata Prefectural Institute of Public Health, 1-6-6 Toka-machi, Yamagata, 990-0031, Japan.
Mutsuyo GokudenKagoshima Prefectural Institute for Environmental Research and Public Health, 11-40 Kinko cho, Kagoshima, 892-0835, Japan.
Masako AndohLaboratory of Veterinary Public Health, Joint Faculty of Veterinary Medicine, Kagoshima University, 1-21-24 Korimoto, Kagoshima, 890-0065, Japan.
Hideo OosakoKumamoto Prefectural Institute of Public-Health and Environmental Science, Uto-shi, Kumamoto, 869-0425, Japan.
Ken KatakuraLaboratory of Parasitology, Faculty of Veterinary Medicine, Graduate School of Infectious Diseases, Hokkaido University, N 18 W 9, Kita-ku, Sapporo, 060-0818, Japan.
Ayato TakadaGlobal Station for Zoonosis Control, Global Institution for Collaborative Research and Education (GI-CoRE), Hokkaido University, N 18 W 9, Kita-ku, Sapporo, 060-0818, Japan.
Chihiro SugimotoGlobal Station for Zoonosis Control, Global Institution for Collaborative Research and Education (GI-CoRE), Hokkaido University, N 18 W 9, Kita-ku, Sapporo, 060-0818, Japan.
Norikazu IsodaUnit of Risk Analysis and Management, Hokkaido University Research Center for Zoonosis Control, N 20 W 10, Kita-ku, Sapporo, 001-0020, Japan.
Ryo NakaoLaboratory of Parasitology, Faculty of Veterinary Medicine, Graduate School of Infectious Diseases, Hokkaido University, N 18 W 9, Kita-ku, Sapporo, 060-0818, Japan. ryo.nakao@vetmed.hokudai.ac.jp.
Hokkaido University · JPFukushima Medical University · JPKagoshima Prefectural Institute For Education Research · JPKagoshima University · JPKumamoto Health Science University · JPUniversity of Zambia · ZMYamagata Prefectural Institute of Public Health · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spotted fever group (SFG) rickettsiae are obligate intracellular Gram-negative bacteria mainly associated with ticks. In Japan, several hundred cases of Japanese spotted fever, caused by Rickettsia japonica, are reported annually. Other Rickettsia species are also known to exist in ixodid ticks; however, their phylogenetic position and pathogenic potential are poorly understood. We conducted a nationwide cross-sectional survey on questing ticks to understand the overall diversity of SFG rickettsiae in Japan. Out of 2,189 individuals (19 tick species in 4 genera), 373 (17.0%) samples were positive for Rickettsia spp. as ascertained by real-time PCR amplification of the citrate synthase gene (gltA). Conventional PCR and sequencing analyses of gltA indicated the presence of 15 different genotypes of SFG rickettsiae. Based on the analysis of five additional genes, we characterised five Rickettsia species; R. asiatica, R. helvetica, R. monacensis (formerly reported as Rickettsia sp. In56 in Japan), R. tamurae, and Candidatus R. tarasevichiae and several unclassified SFG rickettsiae. We also found a strong association between rickettsial genotypes and their host tick species, while there was little association between rickettsial genotypes and their geographical origins. These observations suggested that most of the SFG rickettsiae have a limited host range and are maintained in certain tick species in the natural environment.

Indexed as

AnimalsBacterial ProteinsCross-Sectional StudiesDNA, BacterialHost-Parasite InteractionsIxodidaeJapanPhylogenyPolymerase Chain ReactionRickettsiaSpotted Fever Group RickettsiosisTicksBacterial ProteinsDNA, Bacterial

Identifiers

PMID30728409
PMCPMC6365641
OpenAlexW2915225319

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.