Evidence map›Paper›PMID 30728369›Full record

ArticleScientific reports2019

Transcriptomic profiles of tumor-associated neutrophils reveal prominent roles in enhancing angiogenesis in liver tumorigenesis in zebrafish.

Xiaojing Huo, Hankun Li, Zhen Li, Chuan Yan, Ira Agrawal, Sinnakaruppan Mathavan, Jianjun Liu, Zhiyuan Gong

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 37 citations in OpenAlex.

  1. PD-L1Technology in cancer research & treatment
    Trial
  2. Review
  3. Review
  4. Methods to Study Liver Disease Using Zebrafish Larvae.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Neutrophil dynamics in the tumor microenvironment.The Journal of clinical investigation · 2021
    Review
  13. Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Xiaojing HuoDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Hankun LiDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Zhen LiGenome Institute of Singapore, Singapore, Singapore.
Chuan YanDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Ira AgrawalDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Sinnakaruppan MathavanGenome Institute of Singapore, Singapore, Singapore.
Jianjun LiuGenome Institute of Singapore, Singapore, Singapore.ORCID 0000-0002-3255-3019
Zhiyuan GongDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore. dbsgzy@nus.edu.sg.ORCID 0000-0002-9660-5260
National University of Singapore · SGGenome Institute of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have previously demonstrated the pro-tumoral role of neutrophils using a kras-induced zebrafish hepatocarcinogenesis model. To further illustrate the molecular basis of the pro-tumoral role, Tumor-associated neutrophils (TANs) were isolated by fluorescence-activated cell sorting (FACS) and transcriptomic analyses were carried out by RNA-Seq. Differentially expressed gene profiles of TANs from larvae, male and female livers indicate great variations during liver tumorigenesis, but the common responsive canonical pathways included an immune pathway (Acute Phase Response Signaling), a liver metabolism-related pathway (LXR/RXR Activation) and Thrombin Signaling. Consistent with the pro-tumoral role of TANs, gene module analysis identified a consistent down-regulation of Cytotoxicity module, which may allow continued proliferation of malignant cells. Gene Set Enrichment Analysis indicated up-regulation of several genes promoting angiogenesis. Consistent with this, we found decreased density of blood vessels accompanied with decreased oncogenic liver sizes in neutrophil-depleted larvae. Collectively, our study has indicated some molecular mechanisms of the pro-tumoral roles of TANs in hepatocarcinogenesis, including weakened immune clearance against tumor cells and enhanced function in angiogenesis.

Indexed as

Gene Expression Regulation, NeoplasticTranscriptomeAnimalsCarcinogenesisGene Expression ProfilingHumansLiver Neoplasms, ExperimentalMiceNeovascularization, PathologicNeutrophilsSignal TransductionZebrafish

Identifiers

PMID30728369
PMCPMC6365535
OpenAlexW2911957081

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.