Evidence map›Paper›PMID 30728297›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Diverse GPCRs exhibit conserved water networks for stabilization and activation.

A J Venkatakrishnan, Anthony K Ma, Rasmus Fonseca, Naomi R Latorraca, Brendan Kelly, Robin M Betz, Chaitanya Asawa, Brian K Kobilka, Ron O Dror

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Direct evidence of acid-driven protein desolvation.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  10. Human Serum Albumin: 3D Insight on Protein Hydration.International journal of molecular sciences · 2025
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  12. Structure of human green cone opsin yields insights into mechanisms underlying the rapid decay of its active, signaling state.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Discovering Key Activation Hotspots in the MJournal of the American Chemical Society · 2025
    Article
  19. Article
  20. Article

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

A J VenkatakrishnanDepartment of Computer Science, Stanford University, Stanford, CA 94305.
Anthony K MaDepartment of Computer Science, Stanford University, Stanford, CA 94305.
Rasmus FonsecaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305.
Naomi R LatorracaDepartment of Computer Science, Stanford University, Stanford, CA 94305.
Brendan KellyDepartment of Computer Science, Stanford University, Stanford, CA 94305.
Robin M BetzDepartment of Computer Science, Stanford University, Stanford, CA 94305.
Chaitanya AsawaDepartment of Computer Science, Stanford University, Stanford, CA 94305.
Brian K KobilkaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305; kobilka@stanford.edu ron.dror@stanford.edu.
Ron O DrorDepartment of Computer Science, Stanford University, Stanford, CA 94305; kobilka@stanford.edu ron.dror@stanford.edu.ORCID 0000-0002-6418-2793

Funding

Structure and dynamics of G protein coupled receptor-G protein complexesR01GM083118 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KOBILKA, BRIAN K, SKINIOTIS, GEORGIOS · 2008 to 2023
$8.3M
THE MECHANISM OF BETA2 ADRENOCEPTOR ACTIVATIONR01NS028471 · NINDS · STANFORD UNIVERSITY · PI KOBILKA, BRIAN K · 1990 to 2021
$6.7M
Structural Basis of Opioid Receptor FunctionR37DA036246 · NIDA · STANFORD UNIVERSITY · PI KOBILKA, BRIAN K · 2013 to 2020
$4.2M
Discovering the mechanism of GPCR-mediated arrestin stimulation to enable effective drug therapiesR01GM127359 · NIGMS · STANFORD UNIVERSITY · PI DROR, RON · 2018 to 2022
$1.5M
NIDA NIH HHS R37 DA036246NIGMS NIH HHS R01 GM083118NIGMS NIH HHS R01 GM127359NINDS NIH HHS R01 NS028471
6 · The paper itself

Abstract

G protein-coupled receptors (GPCRs) have evolved to recognize incredibly diverse extracellular ligands while sharing a common architecture and structurally conserved intracellular signaling partners. It remains unclear how binding of diverse ligands brings about GPCR activation, the common structural change that enables intracellular signaling. Here, we identify highly conserved networks of water-mediated interactions that play a central role in activation. Using atomic-level simulations of diverse GPCRs, we show that most of the water molecules in GPCR crystal structures are highly mobile. Several water molecules near the G protein-coupling interface, however, are stable. These water molecules form two kinds of polar networks that are conserved across diverse GPCRs: (

Indexed as

Protein ConformationStructure-Activity RelationshipCrystallography, X-RayHumansLigandsMuscle Stretching ExercisesReceptors, G-Protein-CoupledSignal TransductionWaterLigandsReceptors, G-Protein-CoupledWateractivationGPCR dynamicsmolecular dynamics simulationpolar networkwater molecules

Identifiers

PMID30728297
PMCPMC6386714

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.