Evidence map›Paper›PMID 30728001›Full record

ArticleBMC infectious diseases2019

Pyrazinamide resistance and mutations in pncA among isolates of Mycobacterium tuberculosis from Khyber Pakhtunkhwa, Pakistan.

Muhammad Tahir Khan, Shaukat Iqbal Malik, Sajid Ali, Nayyer Masood, Tariq Nadeem, Anwar Sheed Khan, Muhammad Tanvir Afzal

Abstract read
In one paragraph

Article in BMC infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

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28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
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  4. Enhancing diagnostic efficiency of pyrazinamide resistance inCurrent research in microbial sciences · 2025
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  6. OvercomingACS omega · 2023
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  7. Anti-tuberculosis drug resistance in Slovakia, 2018-2019: The first whole-genome epidemiological study.Journal of clinical tuberculosis and other mycobacterial diseases · 2022
    Review
  8. Article
  9. Article
  10. Genome analyses of 174 strains ofMicrobial genomics · 2021
    Article
  11. Article
  12. Article
  13. Structural and Genomic Insights Into Pyrazinamide Resistance inFrontiers in molecular biosciences · 2021
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

7 authors.

Muhammad Tahir KhanDepartment of Bioinformatics and Biosciences, Capital University of Science and Technology, Islamabad Expressway, Kahuta Road, Zone-V, Islamabad, Pakistan. pi133001@cust.pk.ORCID http://orcid.org/0000-0003-4224-8971
Shaukat Iqbal MalikDepartment of Bioinformatics and Biosciences, Capital University of Science and Technology, Islamabad Expressway, Kahuta Road, Zone-V, Islamabad, Pakistan.
Sajid AliDepartment of Microbiology, Quaid-E-Azam University Islamabad and Provincial Tuberculosis Reference, Laboratory Hayatabad Medical Complex, Peshawar, Pakistan.
Nayyer MasoodDepartment of Computer Science, Capital University of Science and Technology, Islamabad, Pakistan.
Tariq NadeemNational Center of Excellence in Molecular Biology, University of The Punjab, Lahore, Pakistan.
Anwar Sheed KhanInstitute of Basic Medical Sciences, Khyber Medical University and Provincial Tuberculosis Control Laboratory Hayatabad Medical Complex Peshawar, Peshawar, Pakistan.
Muhammad Tanvir AfzalDepartment of Computer Science, Capital University of Science and Technology, Islamabad, Pakistan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPyrazinamide (PZA) is an important component of first-line drugs because of its distinctive capability to kill subpopulations of persistent Mycobacterium tuberculosis (MTB). The prodrug (PZA) is converted to its active form, pyrazinoic acid (POA) by MTB pncA-encoded pyrazinamidase (PZase). Mutation in pncA is the most common and primary cause of PZA resistance. The aim of the present study was to explore the molecular characterization of PZA resistance in a Pashtun-dominated region of Khyber Pakhtunkhwa, Pakistan.

methodsWe performed drug susceptibility testing (DST) on 753 culture-positive isolates collected from the Provincial Tuberculosis Control Program Khyber Pakhtunkhwa using the BACTEC MGIT 960 PZA method. In addition, the pncA gene was sequenced in PZA-resistant isolates, and PZA susceptibility testing results were used to determine the sensitivity and specificity of pncA gene mutations.

resultsA total of 69 isolates were PZA resistant (14.8%). Mutations were investigated in 69 resistant, 26 susceptible and one H37Rv isolates by sequencing. Thirty-six different mutations were identified in PZA-resistant isolates, with fifteen mutations, including 194_203delCCTCGTCGTG and 317_318delTC, that have not been reported in TBDRM and GMTV Databases and previous studies. Mutations Lys96Thr and Ser179Gly were found in the maximum number of isolates (n = 4 each). We did not detect mutations in sensitive isolates, except for the synonymous mutation 195C > T (Ser65Ser). The sensitivity and specificity of the pncA sequencing method were 79.31% (95% CI, 69.29 to 87.25%) and 86.67% (95% CI, 69.28 to 96.24%).

conclusionMutations in the pncA gene in circulating isolates of geographically distinct regions, especially in high-burden countries, should be investigated for better control and management of drug-resistant TB. Molecular methods for the investigation of PZA resistance are better than DST.

Indexed as

MutationAdolescentAdultAgedAmidohydrolasesAntitubercular AgentsChildDrug Resistance, BacterialHumansMicrobial Sensitivity TestsMiddle AgedMycobacterium tuberculosisPakistanPyrazinamideSensitivity and SpecificitySequence Analysis, DNAAmidohydrolasesAntitubercular AgentsPncA protein, Mycobacterium tuberculosisPyrazinamidepyrazinoic acidMutationspncAPyrazinamideResistance

Identifiers

PMID30728001
PMCPMC6364397

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.