Evidence map›Paper›PMID 30727955›Full record

ArticleBMC genomics2019

Global host molecular perturbations upon in situ loss of bacterial endosymbionts in the deep-sea mussel Bathymodiolus azoricus assessed using proteomics and transcriptomics.

Camille Détrée, Iman Haddad, Emmanuelle Demey-Thomas, Joëlle Vinh, François H Lallier, Arnaud Tanguy, Jean Mary

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Camille DétréeCentro FONDAP de Investigación en Dinámica de Ecosistemas Marinos de Altas Latitudes (IDEAL), Universidad Austral de Chile, Valdivia, Chile.
Iman HaddadESPCI ParisTech, CNRS, USR 3149, Spectrométrie de Masse Biologique et Protéomique, 75231, Paris Cedex 05, France.
Emmanuelle Demey-ThomasESPCI ParisTech, CNRS, USR 3149, Spectrométrie de Masse Biologique et Protéomique, 75231, Paris Cedex 05, France.
Joëlle VinhESPCI ParisTech, CNRS, USR 3149, Spectrométrie de Masse Biologique et Protéomique, 75231, Paris Cedex 05, France.
François H LallierSorbonne Université, CNRS, Lab. Adaptation et Diversité en Milieu Marin, Team ABICE, Station Biologique de Roscoff, 29680, Roscoff, France.
Arnaud TanguySorbonne Université, CNRS, Lab. Adaptation et Diversité en Milieu Marin, Team ABICE, Station Biologique de Roscoff, 29680, Roscoff, France.
Jean MarySorbonne Université, CNRS, Lab. Adaptation et Diversité en Milieu Marin, Team ABICE, Station Biologique de Roscoff, 29680, Roscoff, France. jmary@sb-roscoff.fr.ORCID http://orcid.org/0000-0002-2438-8383
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundColonization of deep-sea hydrothermal vents by most invertebrates was made efficient through their adaptation to a symbiotic lifestyle with chemosynthetic bacteria, the primary producers in these ecosystems. Anatomical adaptations such as the establishment of specialized cells or organs have been evidenced in numerous deep-sea invertebrates. However, very few studies detailed global inter-dependencies between host and symbionts in these ecosystems. In this study, we proposed to describe, using a proteo-transcriptomic approach, the effects of symbionts loss on the deep-sea mussel Bathymodiolus azoricus' molecular biology. We induced an in situ depletion of symbionts and compared the proteo-transcriptome of the gills of mussels in three conditions: symbiotic mussels (natural population), symbiont-depleted mussels and aposymbiotic mussels.

resultsGlobal proteomic and transcriptomic results evidenced a global disruption of host machinery in aposymbiotic organisms. We observed that the total number of proteins identified decreased from 1118 in symbiotic mussels to 790 in partially depleted mussels and 761 in aposymbiotic mussels. Using microarrays we identified 4300 transcripts differentially expressed between symbiont-depleted and symbiotic mussels. Among these transcripts, 799 were found differentially expressed in aposymbiotic mussels and almost twice as many in symbiont-depleted mussels as compared to symbiotic mussels. Regarding apoptotic and immune system processes - known to be largely involved in symbiotic interactions - an overall up-regulation of associated proteins and transcripts was observed in symbiont-depleted mussels.

conclusionOverall, our study showed a global impairment of host machinery and an activation of both the immune and apoptotic system following symbiont-depletion. One of the main assumptions is the involvement of symbiotic bacteria in the inhibition and regulation of immune and apoptotic systems. As such, symbiotic bacteria may increase their lifespan in gill cells while managing the defense of the holobiont against putative pathogens.

Indexed as

Chemoautotrophic GrowthGene Expression RegulationSymbiosisAnimalsBacteriaGene Expression ProfilingGillsHydrothermal VentsMicrobiotaMytilidaeProteomicsChemoautotrophic symbiosisHydrothermal ventIn situ experimentMutualismProteo-transcriptomics

Identifiers

PMID30727955
PMCPMC6364412
OpenAlexW2940310137

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.