Evidence map›Paper›PMID 30726710›Full record

ArticleJournal of molecular biology2019

Rewiring of RSK-PDZ Interactome by Linear Motif Phosphorylation.

Gergő Gógl, Beáta Biri-Kovács, Fabien Durbesson, Pau Jane, Yves Nomine, Camille Kostmann, Viktória Bilics, Márton Simon, Attila Reményi, Renaud Vincentelli and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
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  5. Review
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  7. Review
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  9. Article
  10. Dynamic Control of Signaling by Phosphorylation of PDZ Binding Motifs.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  11. Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Gergő GóglDepartment of Biochemistry, ELTE Eötvös Loránd University, Budapest, Hungary.
Beáta Biri-KovácsDepartment of Biochemistry, ELTE Eötvös Loránd University, Budapest, Hungary.
Fabien DurbessonUnite Mixte de Recherche (UMR) 7257, Centre National de la Recherche Scientifique (CNRS) Aix-Marseille Universite, Architecture et Fonction des Macromolécules Biologiques (AFMB), Marseille, France.
Pau JaneEquipe Labellisee Ligue 2015, Department of Integrated Structural Biology, Institut de Genetique et de Biologie Moleculaire et Cellulaire (IGBMC), INSERM U1258/CNRS UMR 7104/Universite de Strasbourg, 1 rue Laurent Fries, BP 10142, F-67404 Illkirch, France.
Yves NomineEquipe Labellisee Ligue 2015, Department of Integrated Structural Biology, Institut de Genetique et de Biologie Moleculaire et Cellulaire (IGBMC), INSERM U1258/CNRS UMR 7104/Universite de Strasbourg, 1 rue Laurent Fries, BP 10142, F-67404 Illkirch, France.
Camille KostmannEquipe Labellisee Ligue 2015, Department of Integrated Structural Biology, Institut de Genetique et de Biologie Moleculaire et Cellulaire (IGBMC), INSERM U1258/CNRS UMR 7104/Universite de Strasbourg, 1 rue Laurent Fries, BP 10142, F-67404 Illkirch, France.
Viktória BilicsDepartment of Biochemistry, ELTE Eötvös Loránd University, Budapest, Hungary.
Márton SimonDepartment of Biochemistry, ELTE Eötvös Loránd University, Budapest, Hungary.
Attila ReményiInstitute of Enzymology, Research Center for Natural Sciences, Hungarian Academy of Sciences, Budapest, Hungary.
Renaud VincentelliUnite Mixte de Recherche (UMR) 7257, Centre National de la Recherche Scientifique (CNRS) Aix-Marseille Universite, Architecture et Fonction des Macromolécules Biologiques (AFMB), Marseille, France.
Gilles TraveEquipe Labellisee Ligue 2015, Department of Integrated Structural Biology, Institut de Genetique et de Biologie Moleculaire et Cellulaire (IGBMC), INSERM U1258/CNRS UMR 7104/Universite de Strasbourg, 1 rue Laurent Fries, BP 10142, F-67404 Illkirch, France. Electronic address: trave@esbs.u-strasbg.fr.
László NyitrayDepartment of Biochemistry, ELTE Eötvös Loránd University, Budapest, Hungary. Electronic address: nyitray@elte.hu.
Eötvös Loránd University · HUAix-Marseille Université · FRInserm · FRUniversité de Strasbourg · FRHungarian Academy of Sciences · HU

Funding

Papillomavirus E6 Structural ConsortiumR01CA134737 · NCI · UNIVERSITY OF VIRGINIA · PI VANDE POL, SCOTT BRIAN · 2010 to 2019
$4.2M
NCI NIH HHS R01 CA134737
6 · The paper itself

Abstract

Phosphorylation of short linear peptide motifs is a widespread process for the dynamic regulation of protein-protein interactions. However, the global impact of phosphorylation events on the protein-protein interactome is rarely addressed. The disordered C-terminal tail of ribosomal S6 kinase 1 (RSK1) binds to PDZ domain-containing scaffold proteins, and it harbors a phosphorylatable PDZ-binding motif (PBM) responsive to epidermal growth factor stimulation. Here, we examined binding of two versions of the RSK1 PBM, either phosphorylated or unphosphorylated at position -3, to almost all (95%) of the 266 PDZ domains of the human proteome. PBM phosphorylation dramatically altered the PDZ domain-binding landscape of RSK1, by strengthening or weakening numerous interactions to various degrees. The RSK-PDZome interactome analyzed in this study reveals how linear motif-based phospho-switches convey stimulus-dependent changes in the context of related network components.

Indexed as

PDZ DomainsProtein Interaction Domains and MotifsBinding SitesEpidermal Growth FactorHumansModels, MolecularPhosphorylationProtein BindingrhoA GTP-Binding ProteinRibosomal Protein S6 Kinases, 90-kDaEpidermal Growth FactorrhoA GTP-Binding ProteinRHOA protein, humanRibosomal Protein S6 Kinases, 90-kDaRPS6KA1 protein, humanMAPKPDZphosphorylationprotein–protein interactionRSK

Identifiers

PMID30726710
PMCPMC6424611
OpenAlexW2952244535

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.