Evidence map›Paper›PMID 30726265›Full record

ArticlePloS one2019

Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genus Dioon.

Pablo de Jesús Suárez-Moo, Andrew P Vovides, M Patrick Griffith, Francisco Barona-Gómez, Angélica Cibrián-Jaramillo

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
7.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Plants (Basel, Switzerland) · 2023
    Article
  9. Review
  10. Article
  11. Article
  12. Full-Length 16S rRNA andEvolutionary bioinformatics online · 2021
    Article
  13. Crop Management Impacts the Soybean (Frontiers in microbiology · 2020
    Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Pablo de Jesús Suárez-MooEcological and Evolutionary Genomics Laboratory, Unidad de Genómica Avanzada (Langebio), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (Cinvestav-IPN), Irapuato, Guanajuato, Mexico.
Andrew P VovidesInstituto de Ecología, A.C., Red de Ecología Evolutiva, Xalapa, Veracruz, Mexico.
M Patrick GriffithMontgomery Botanical Center, Coral Gables, Miami, Florida, United States of America.
Francisco Barona-GómezEvolution of Metabolic Diversity Laboratory, Unidad de Genómica Avanzada (Langebio), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (Cinvestav-IPN), Irapuato, Guanajuato, Mexico.
Angélica Cibrián-JaramilloEcological and Evolutionary Genomics Laboratory, Unidad de Genómica Avanzada (Langebio), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (Cinvestav-IPN), Irapuato, Guanajuato, Mexico.ORCID 0000-0002-7974-455X
Instituto Politécnico Nacional · MXInstituto de Ecología · MXMontgomery Botanical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cycads are among the few plants that have developed specialized roots to host nitrogen-fixing bacteria. We describe the bacterial diversity of the coralloid roots from seven Dioon species and their surrounding rhizosphere and soil. Using 16S rRNA gene amplicon sequencing, we found that all coralloid roots are inhabited by a broad diversity of bacterial groups, including cyanobacteria and Rhizobiales among the most abundant groups. The diversity and composition of the endophytes are similar in the six Mexican species of Dioon that we evaluated, suggesting a recent divergence of Dioon populations and/or similar plant-driven restrictions in maintaining the coralloid root microbiome. Botanical garden samples and natural populations have a similar taxonomic composition, although the beta diversity differed between these populations. The rhizosphere surrounding the coralloid root serves as a reservoir and source of mostly diazotroph and plant growth-promoting groups that colonize the coralloid endosphere. In the case of cyanobacteria, the endosphere is enriched with Nostoc spp and Calothrix spp that are closely related to previously reported symbiont genera in cycads and other early divergent plants. The data reported here provide an in-depth taxonomic characterization of the bacterial community associated with coralloid root microbiome. The functional aspects of the endophytes, their biological interactions, and their evolutionary history are the next research step in this recently discovered diversity within the cycad coralloid root microbiome.

Indexed as

BiodiversityDNA, RibosomalEndophytesNitrogen-Fixing BacteriaPhylogenyPlant RootsRhizosphereRNA, Ribosomal, 16SSequence Analysis, DNAZamiaceaeDNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID30726265
PMCPMC6364921
OpenAlexW2953018366

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.