Evidence map›Paper›PMID 30726160›Full record

ArticleMolecular biology of the cell2019

Action of Arl1 GTPase and golgin Imh1 in Ypt6-independent retrograde transport from endosomes to the trans-Golgi network.

Yan-Ting Chen, I-Hao Wang, Yi-Hsun Wang, Wan-Yun Chiu, Jen-Hao Hu, Wen-Hui Chen, Fang-Jen S Lee

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.5field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. GARP Complex in Golgi Physiology.Sub-cellular biochemistry · 2026
    Review
  3. Review
  4. Endocytosis and trans-Golgi Network in Yeast.Sub-cellular biochemistry · 2026
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Structural basis for Rab6 activation by the Ric1-Rgp1 complex.bioRxiv : the preprint server for biology · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Role of GARP Vesicle Tethering Complex in Golgi Physiology.International journal of molecular sciences · 2023
    Review
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yan-Ting ChenInstitute of Molecular Medicine, College of Medicine, National Taiwan University, Taipei 100, Taiwan.
I-Hao WangInstitute of Molecular Medicine, College of Medicine, National Taiwan University, Taipei 100, Taiwan.
Yi-Hsun WangInstitute of Molecular Medicine, College of Medicine, National Taiwan University, Taipei 100, Taiwan.
Wan-Yun ChiuInstitute of Molecular Medicine, College of Medicine, National Taiwan University, Taipei 100, Taiwan.
Jen-Hao HuInstitute of Molecular Medicine, College of Medicine, National Taiwan University, Taipei 100, Taiwan.
Wen-Hui ChenInstitute of Molecular Medicine, College of Medicine, National Taiwan University, Taipei 100, Taiwan.
Fang-Jen S LeeInstitute of Molecular Medicine, College of Medicine, National Taiwan University, Taipei 100, Taiwan.
National Taiwan University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Arf and Rab/Ypt GTPases coordinately regulate membrane traffic and organelle structure by regulating vesicle formation and fusion. Ample evidence has indicated that proteins in these two families may function in parallel or complementarily; however, the manner in which Arf and Rab/Ypt proteins perform interchangeable functions remains unclear. In this study, we report that a Golgi-localized Arf, Arl1, could suppress Ypt6 dysfunction via its effector golgin, Imh1, but not via the lipid flippase Drs2. Ypt6 is critical for the retrograde transport of vesicles from endosomes to the trans-Golgi network (TGN), and its mutation leads to severe protein mislocalization and growth defects. We first overexpress the components of the Arl3-Syt1-Arl1-Imh1 cascade and show that only Arl1 and Imh1 can restore endosome-to-TGN trafficking in ypt6-deleted cells. Interestingly, increased abundance of Arl1 or Imh1 restores localization of the tethering factor Golgi associated retrograde-protein (GARP) complex to the TGN in the absence of Ypt6. We further show that the N-terminal domain of Imh1 is critical for restoring GARP localization and endosome-to-TGN transport in ypt6-deleted cells. Together, our results reveal the mechanism by which Arl1-Imh1 facilitates the recruitment of GARP to the TGN and compensates for the endosome-to-TGN trafficking defects in dysfunctional Ypt6 conditions.

Indexed as

ADP-Ribosylation FactorsBiological TransportEndocytosisEndosomesGolgi ApparatusGolgi Matrix ProteinsMembrane ProteinsMonomeric GTP-Binding ProteinsProtein Transportrab GTP-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteinstrans-Golgi NetworkVesicular Transport ProteinsADP-Ribosylation FactorsARL1 protein, S cerevisiaeGolgi Matrix ProteinsIMH1 protein, S cerevisiaeMembrane ProteinsMonomeric GTP-Binding Proteinsrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsVesicular Transport ProteinsYPT6 protein, S cerevisiae

Identifiers

PMID30726160
PMCPMC6589904
OpenAlexW2912732489

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.