Evidence map›Paper›PMID 30723313›Full record

ArticleThe pharmacogenomics journal2019

DPYD*6 plays an important role in fluoropyrimidine toxicity in addition to DPYD*2A and c.2846A>T: a comprehensive analysis in 1254 patients.

Marzia Del Re, Saverio Cinieri, Angela Michelucci, Stefano Salvadori, Fotios Loupakis, Marta Schirripa, Chiara Cremolini, Stefania Crucitta, Cecilia Barbara, Angelo Di Leo and 16 more

Open access · hybridAbstract read
In one paragraph

Article in The pharmacogenomics journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 49 citations in OpenAlex.

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  9. Clinical Implementation of Rare and NovelInternational journal of biological sciences · 2024
    Review
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  18. Review
  19. Review
  20. Journal of personalized medicine · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 13 institutions in 1 country.

Marzia Del ReClinical Pharmacology and Pharmacogenetics Unit, Department of Clinical and Experimental Medicine, University of Pisa, Pisa, Italy.ORCID http://orcid.org/0000-0001-7343-6161
Saverio CinieriMedical Oncology Division and Breast Unit, Civil Hospital, Brindisi, Italy.
Angela MichelucciMedical Genetics Unit, Department of Laboratory Medicine, Azienda Ospedaliero-Universitaria Pisana, Pisa, Italy.
Stefano SalvadoriEpidemiology and Health Services Research Department, Institute of Clinical Physiology, National Research Council (CNR), Pisa, Italy.
Fotios LoupakisMedical Oncology Unit, Istituto Oncologico del Veneto IRCCS, Padova, Italy.
Marta SchirripaMedical Oncology Unit, Istituto Oncologico del Veneto IRCCS, Padova, Italy.
Chiara CremoliniMedical Oncology Unit, Department of Translational Research and New Technologies in Medicine, University of Pisa, Pisa, Italy.
Stefania CrucittaClinical Pharmacology and Pharmacogenetics Unit, Department of Clinical and Experimental Medicine, University of Pisa, Pisa, Italy.
Cecilia BarbaraMedical Oncology Unit, Civil Hospital, Livorno, Italy.
Angelo Di LeoMedical Oncology Unit, Civil Hospital, Prato, Italy.
Tiziana Pia LatianoMedical Oncology Unit, Casa Sollievo della Sofferenza IRCCS, San Giovanni Rotondo, Italy.
Filippo PietrantonioMedical Oncology Unit, Fondazione IRCCS Istituto Nazionale dei Tumori, Milano, Italy.
Samantha Di DonatoMedical Oncology Unit, Civil Hospital, Prato, Italy.
Paolo SimiMedical Genetics Unit, Department of Laboratory Medicine, Azienda Ospedaliero-Universitaria Pisana, Pisa, Italy.
Alessandro PassardiMedical Oncology Unit, Istituto Scientifico Romagnolo per lo Studio e la Cura dei Tumori IRCCS, Meldola, Italy.
Filippo De BraudMedical Oncology Unit, Fondazione IRCCS Istituto Nazionale dei Tumori, Milano, Italy.
Giuseppe AltavillaMedical Oncology Unit, Department of Human Pathology, University of Messina, Messina, Italy.
Claudio ZamagniMedical Oncology Unit, Addarii Institute of Oncology, S. Orsola-Malpighi Hospital, Bologna, Italy.
Roberto BordonaroMedical Oncology Unit, Department of Oncology, ARNAS Garibaldi, Catania, Italy.
Alfredo ButeraMedical Oncology Unit, Department of Oncology, Civil Hospital, Agrigento, Italy.
Evaristo MaielloMedical Oncology Unit, Casa Sollievo della Sofferenza IRCCS, San Giovanni Rotondo, Italy.
Carmine PintoMedical Oncology Unit, Arcispedale Santa Maria Nuova IRCCS, Reggio Emilia, Italy.
Alfredo FalconeMedical Oncology Unit, Department of Translational Research and New Technologies in Medicine, University of Pisa, Pisa, Italy.
Valentina MazzottiStatistics Applied to Clinical Trials Unit, Azienda Ospedaliero-Universitaria Pisana, Pisa, Italy.
Riccardo MorgantiStatistics Applied to Clinical Trials Unit, Azienda Ospedaliero-Universitaria Pisana, Pisa, Italy.
Romano DanesiClinical Pharmacology and Pharmacogenetics Unit, Department of Clinical and Experimental Medicine, University of Pisa, Pisa, Italy. romano.danesi@unipi.it.
University of Pisa · ITAzienda Ospedaliera Universitaria Pisana · ITCasa Sollievo della Sofferenza · ITFondazione IRCCS Istituto Nazionale dei Tumori · ITHospital of Prato · ITIstituto Oncologico Veneto · ITIRCCS Azienda Ospedliero-Universitaria di Bologna Policlinico di Sant'Orsola · ITIstituto di Fisiologia Clinica · ITIstituto Scientifico Romagnolo per lo Studio e la Cura dei Tumori · ITOspedale di Livorno · ITOspedale Garibaldi · ITOspedale Santa Maria · ITUniversity of Messina · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dihydropyrimidine dehydrogenase (DPYD) is a highly polymorphic gene and classic deficient variants (i.e., c.1236G>A/HapB3, c.1679T>G, c.1905+1G>A and c.2846A>T) are characterized by impaired enzyme activity and risk of severe adverse drug reactions (ADRs) in patients treated with fluoropyrimidines. The identification of poor metabolizers by pre-emptive DPYD screening may reduce the rate of ADRs but many patients with wild-type genotype for classic variants may still display ADRs. Therefore, the search for additional DPYD polymorphisms associated with ADRs may improve the safety of treatment with fluoropyrimidines. This study included 1254 patients treated with fluoropyrimidine-containing regimens and divided into cohort 1, which included 982 subjects suffering from gastrointestinal G≥2 and/or hematological G≥3 ADRs, and cohort 2 (control group), which comprised 272 subjects not requiring dose reduction, delay or discontinuation of treatment. Both groups were screened for DPYD variants c.496A>G, c.1236G>A/HapB3, c.1601G>A (DPYD*4), c.1627A>G (DPYD*5), c.1679T>G (DPYD*13), c.1896T>C, c.1905 + 1G>A (DPYD*2A), c.2194G>A (DPYD*6), and c.2846A>T to assess their association with toxicity. Genetic analysis in the two cohorts were done by Real-Time PCR of DNA extracted from 3 ml of whole blood. DPYD c.496A>G, c.1601G>A, c.1627A>G, c.1896T>C, and c.2194G>A variants were found in both cohort 1 and 2, while c.1905+1G>A and c.2846A>T were present only in cohort 1. DPYD c.1679T>G and c.1236G>A/HapB3 were not found. Univariate analysis allowed the selection of c.1905+1G>A, c.2194G>A and c.2846A>T alleles as significantly associated with gastrointestinal and hematological ADRs (p < 0.05), while the c.496A>G variant showed a positive trend of association with neutropenia (p = 0.06). In conclusion, c.2194G>A is associated with clinically-relevant ADRs in addition to the already known c.1905+1G>A and c.2846A>T variants and should be evaluated pre-emptively to reduce the risk of fluoropyrimidine-associated ADRs.

Indexed as

AllelesCohort StudiesDihydrouracil Dehydrogenase (NADP)Drug-Related Side Effects and Adverse ReactionsFemaleGenotypeHumansMaleMiddle AgedPolymorphism, Single NucleotidePyrimidinesDihydrouracil Dehydrogenase (NADP)pyrimidinePyrimidines

Identifiers

PMID30723313
PMCPMC6867961
OpenAlexW2912782925

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.