Evidence map›Paper›PMID 30723205›Full record

ArticleNature communications2019

TGFβ/BMP immune signaling affects abundance and function of C. elegans gut commensals.

Maureen Berg, David Monnin, Juhyun Cho, Lydia Nelson, Alex Crits-Christoph, Michael Shapira

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 77 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Maureen BergDepartment of Integrative Biology, University of California, Berkeley, CA, 94720, USA.
David MonninDepartment of Integrative Biology, University of California, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0003-1329-5939
Juhyun ChoDepartment of Integrative Biology, University of California, Berkeley, CA, 94720, USA.
Lydia NelsonDepartment of Integrative Biology, University of California, Berkeley, CA, 94720, USA.
Alex Crits-ChristophGraduate Group in Microbiology, University of California, Berkeley, CA, 94720, USA.
Michael ShapiraDepartment of Integrative Biology, University of California, Berkeley, CA, 94720, USA. mshapira@berkeley.edu.
University of California, Berkeley · US

Funding

Age-dependent changes in gut microbiota composition and their significance for host agingR01AG061302 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI SHAPIRA, MICHAEL · 2019 to 2023
$1.6M
C. elegans as a model for studying genetic control of microbiota structure and functionR01OD024780 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI SHAPIRA, MICHAEL · 2018 to 2020
$1.2M
NIA NIH HHS R01 AG061302NIH HHS R01 OD024780
6 · The paper itself

Abstract

The gut microbiota contributes to host health and fitness, and imbalances in its composition are associated with pathology. However, what shapes microbiota composition is not clear, in particular the role of genetic factors. Previous work in Caenorhabditis elegans defined a characteristic worm gut microbiota significantly influenced by host genetics. The current work explores the role of central regulators of host immunity and stress resistance, employing qPCR and CFU counts to measure abundance of core microbiota taxa in mutants raised on synthetic communities of previously-isolated worm gut commensals. This revealed a bloom, specifically of Enterobacter species, in immune-compromised TGFβ/BMP mutants. Imaging of fluorescently labeled Enterobacter showed that TGFβ/BMP-exerted control operated primarily in the anterior gut and depended on multi-tissue contributions. Enterobacter commensals are common in the worm gut, contributing to infection resistance. However, disruption of TGFβ/BMP signaling turned a normally beneficial Enterobacter commensal to pathogenic. These results demonstrate specificity in gene-microbe interactions underlying gut microbial homeostasis and highlight the pathogenic potential of their disruption.

Indexed as

AnimalsAnimals, Genetically ModifiedBacteriaBone Morphogenetic ProteinsCaenorhabditis elegansCaenorhabditis elegans ProteinsEnterobacterGastrointestinal MicrobiomeHomeostasisHost Microbial InteractionsMutationPopulation DynamicsRNA, Ribosomal, 16SSignal TransductionTransforming Growth Factor betaBone Morphogenetic ProteinsCaenorhabditis elegans ProteinsRNA, Ribosomal, 16STransforming Growth Factor beta

Identifiers

PMID30723205
PMCPMC6363772
OpenAlexW2913361236

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.