Evidence map›Paper›PMID 30723126›Full record

ArticlemBio2019

Didehydro-Cortistatin A Inhibits HIV-1 by Specifically Binding to the Unstructured Basic Region of Tat.

Sonia Mediouni, Krishna Chinthalapudi, Mary K Ekka, Ippei Usui, Joseph A Jablonski, Mark A Clementz, Guillaume Mousseau, Jason Nowak, Venkat R Macherla, Jacob N Beverage and 9 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 83 citations in OpenAlex.

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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 3 countries.

Sonia MediouniDepartment of Immunology and Microbiology, The Scripps Research Institute, Jupiter, Florida, USA.
Krishna ChinthalapudiDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida, USA.
Mary K EkkaCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.
Ippei UsuiSirenas, La Jolla, California, USA.
Joseph A JablonskiDepartment of Immunology and Microbiology, The Scripps Research Institute, Jupiter, Florida, USA.
Mark A ClementzDepartment of Immunology and Microbiology, The Scripps Research Institute, Jupiter, Florida, USA.
Guillaume MousseauDepartment of Immunology and Microbiology, The Scripps Research Institute, Jupiter, Florida, USA.
Jason NowakDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida, USA.
Venkat R MacherlaSirenas, La Jolla, California, USA.
Jacob N BeverageSirenas, La Jolla, California, USA.
Eduardo EsquenaziSirenas, La Jolla, California, USA.
Phil BaranDepartment of Chemistry, The Scripps Research Institute, La Jolla, California, USA.
Ian Mitchelle S de VeraDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida, USA.
Douglas KojetinDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida, USA.
Erwann P LoretAix Marseille University, University of Avignon, IMBE UMR CNRS 7263, IRD 237, Faculty of Pharmacy, Avignon, France.
Kendall NettlesDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida, USA.
Souvik MaitiCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.
Tina IzardDepartment of Immunology and Microbiology, The Scripps Research Institute, Jupiter, Florida, USA.
Susana T ValenteDepartment of Immunology and Microbiology, The Scripps Research Institute, Jupiter, Florida, USA svalente@scripps.edu.
Scripps Research Institute · USSirenas (United States) · USInstitute of Genomics and Integrative Biology · INInstitut de Recherche pour le Développement · FRSaint Louis University · US

Funding

Mode of action of a new Tat HIV-1 inhibitorR01AI097012 · NIAID · UNIVERSITY OF FLORIDA · PI VALENTE, SUSANA T · 2012 to 2022
$7.5M
Towards HIV eradication using a novel Tat inhibitorR01AI118432 · NIAID · SCRIPPS FLORIDA · PI VALENTE, SUSANA T · 2015 to 2019
$2.3M
Structural/biophysical characterization of a potent HIV transcription inhibitorR21AI112462 · NIAID · SCRIPPS FLORIDA · PI VALENTE, SUSANA T · 2015 to 2016
$517k
NIAID NIH HHS R01 AI097012NIAID NIH HHS R01 AI118432NIAID NIH HHS R21 AI112462
6 · The paper itself

Abstract

The intrinsically disordered HIV-1 Tat protein binds the viral RNA transactivation response structure (TAR), which recruits transcriptional cofactors, amplifying viral mRNA expression. Limited Tat transactivation correlates with HIV-1 latency. Unfortunately, Tat inhibitors are not clinically available. The small molecule didehydro-cortistatin A (dCA) inhibits Tat, locking HIV-1 in persistent latency, blocking viral rebound. We generated chemical derivatives of dCA that rationalized molecular docking of dCA to an active and specific Tat conformer. These revealed the importance of the cycloheptene ring and the isoquinoline nitrogen's positioning in the interaction with specific residues of Tat's basic domain. These features are distinct from the ones required for inhibition of cyclin-dependent kinase 8 (CDK8), the only other known ligand of dCA. Besides, we demonstrated that dCA activity on HIV-1 transcription is independent of CDK8. The binding of dCA to Tat with nanomolar affinity alters the local protein environment, rendering Tat more resistant to proteolytic digestion. dCA thus locks a transient conformer of Tat, specifically blocking functions dependent of its basic domain, namely the Tat-TAR interaction; while proteins with similar basic patches are unaffected by dCA. Our results improve our knowledge of the mode of action of dCA and support structure-based design strategies targeting Tat, to help advance development of dCA, as well as novel Tat inhibitors.

Indexed as

Anti-HIV AgentsCyclin-Dependent Kinase 8HeLa CellsHeterocyclic Compounds, 4 or More RingsHIV-1HumansIsoquinolinesMolecular Docking SimulationProtein Bindingtat Gene Products, Human Immunodeficiency VirusAnti-HIV AgentsCyclin-Dependent Kinase 8didehydro-cortistatin AHeterocyclic Compounds, 4 or More RingsIsoquinolinestat Gene Products, Human Immunodeficiency VirusdCAHIV-1 Tatmolecular dockingstructure-activity relationshipstructure-based design

Identifiers

PMID30723126
PMCPMC6368365
OpenAlexW2914889052

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.