Evidence map›Paper›PMID 30723103›Full record

ArticleG3 (Bethesda, Md.)2019

Evidence for an Integrated Gene Repression Mechanism Based on mRNA Isoform Toggling in Human Cells.

Ina Hollerer, Juliet C Barker, Victoria Jorgensen, Amy Tresenrider, Claire Dugast-Darzacq, Leon Y Chan, Xavier Darzacq, Robert Tjian, Elçin Ünal, Gloria A Brar

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Alternative splicing generates isoform diversity inEndocrine oncology (Bristol, England) · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ina HollererDepartment of Molecular and Cell Biology, Barker Hall, University of California, Berkeley, CA 94720.ORCID 0000-0003-4236-0453
Juliet C BarkerDepartment of Molecular and Cell Biology, Barker Hall, University of California, Berkeley, CA 94720.
Victoria JorgensenDepartment of Molecular and Cell Biology, Barker Hall, University of California, Berkeley, CA 94720.
Amy TresenriderDepartment of Molecular and Cell Biology, Barker Hall, University of California, Berkeley, CA 94720.
Claire Dugast-DarzacqDepartment of Molecular and Cell Biology, Li Ka Shing Center, University of California, Berkeley, CA 94720.
Leon Y ChanDepartment of Molecular and Cell Biology, Barker Hall, University of California, Berkeley, CA 94720.
Xavier DarzacqDepartment of Molecular and Cell Biology, Li Ka Shing Center, University of California, Berkeley, CA 94720.
Robert TjianDepartment of Molecular and Cell Biology, Li Ka Shing Center, University of California, Berkeley, CA 94720.
Elçin ÜnalDepartment of Molecular and Cell Biology, Barker Hall, University of California, Berkeley, CA 94720 gabrar@berkeley.edu elcin@berkeley.edu.ORCID 0000-0002-6768-609X
Gloria A BrarDepartment of Molecular and Cell Biology, Barker Hall, University of California, Berkeley, CA 94720 gabrar@berkeley.edu elcin@berkeley.edu.

Funding

Dissecting the roles of pervasive short ORFs in meiosisDP2GM119138 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BRAR, GLORIA ANN · 2015 to 2015
$2.4M
ILLUMINATING CELLULAR AGING PATHWAYS THROUGH GAMETOGENESISDP2AG055946 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI UNAL, ELCIN · 2016 to 2016
$2.2M
Tools For Imaging the Functional Genome in Living Cells and TissuesU01DA047729 · NIDA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DARZACQ, XAVIER, SINGER, ROBERT H · 2018 to 2019
$1.7M
Howard Hughes Medical Institute 003061NIA NIH HHS DP2 AG055946NIDA NIH HHS U01 DA047729NIGMS NIH HHS DP2 GM119138
6 · The paper itself

Abstract

We recently described an unconventional mode of gene regulation in budding yeast by which transcriptional and translational interference collaborate to down-regulate protein expression. Developmentally timed transcriptional interference inhibited production of a well translated mRNA isoform and resulted in the production of an mRNA isoform containing inhibitory upstream open reading frames (uORFs) that prevented translation of the main ORF. Transcriptional interference and uORF-based translational repression are established mechanisms outside of yeast, but whether this type of

Indexed as

Gene Expression RegulationModels, GeneticChromatin ImmunoprecipitationCRISPR-Cas SystemsGene Knockdown TechniquesHistonesHumansMCF-7 CellsPromoter Regions, GeneticProto-Oncogene Proteins c-mdm2HistonesMDM2 protein, humanProto-Oncogene Proteins c-mdm2gene expression regulationLUTIMDM2transcript isoformuORF translation

Identifiers

PMID30723103
PMCPMC6469420

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.