Evidence map›Paper›PMID 30723094›Full record

ArticleMolecular & cellular proteomics : MCP2019

Probing H

Clinton Yu, Xiaorong Wang, Alexander Scott Huszagh, Rosa Viner, Eric Novitsky, Scott D Rychnovsky, Lan Huang

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  4. Kinetic principles of chemical cross-link formation for protein-protein interactions.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Clinton YuFrom the ‡Department of Physiology & Biophysics, University of California, Irvine, Irvine, CA 92694.
Xiaorong WangFrom the ‡Department of Physiology & Biophysics, University of California, Irvine, Irvine, CA 92694.
Alexander Scott HuszaghFrom the ‡Department of Physiology & Biophysics, University of California, Irvine, Irvine, CA 92694.
Rosa Viner§Thermo Fisher, 355 River Oaks Parkway, San Jose, CA 95134.
Eric Novitsky¶Department of Chemistry, University of California, Irvine, Irvine, CA 92694.
Scott D Rychnovsky¶Department of Chemistry, University of California, Irvine, Irvine, CA 92694.
Lan HuangFrom the ‡Department of Physiology & Biophysics, University of California, Irvine, Irvine, CA 92694;. Electronic address: lanhuang@uci.edu.
University of California, Irvine · USThermo Fisher Scientific (United States) · US

Funding

Proteomics of the Proteasome Interacting NetworksR01GM074830 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUANG, LAN · 2005 to 2022
$6.1M
NIGMS NIH HHS R01 GM074830
6 · The paper itself

Abstract

Cytotoxic protein aggregation-induced impairment of cell function and homeostasis are hallmarks of age-related neurodegenerative pathologies. As proteasomal degradation represents the major clearance pathway for oxidatively damaged proteins, a detailed understanding of the molecular events underlying its stress response is critical for developing strategies to maintain cell viability and function. Although the 26S proteasome has been shown to disassemble during oxidative stress, its conformational dynamics remains unclear. To this end, we have developed a new quantitative cross-linking mass spectrometry (QXL-MS) workflow to explore the structural dynamics of proteasome complexes in response to oxidative stress. This strategy comprises SILAC-based metabolic labeling, HB tag-based affinity purification, a 2-step cross-linking reaction consisting of mild

Indexed as

Cross-Linking ReagentsEnzyme StabilityHumansHydrogen PeroxideMass SpectrometryOxidative StressProteasome Endopeptidase ComplexReproducibility of ResultsATP dependent 26S proteaseCross-Linking ReagentsHydrogen PeroxideProteasome Endopeptidase Complex26S proteasomeOxidative stressProtein complex analysisProtein Conformation*Protein Cross-linking*Protein-Protein Interactions*Quantificationquantitative cross-linking mass spectrometrystructural dynamics

Identifiers

PMID30723094
PMCPMC6495261
OpenAlexW2911439417

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.