Evidence map›Paper›PMID 30719076›Full record

ReviewTherapeutic advances in gastroenterology2019

The application of omics techniques to understand the role of the gut microbiota in inflammatory bowel disease.

Jonathan P Segal, Benjamin H Mullish, Mohammed Nabil Quraishi, Animesh Acharjee, Horace R T Williams, Tariq Iqbal, Ailsa L Hart, Julian R Marchesi

Open access · goldAbstract readReview
In one paragraph

Review in Therapeutic advances in gastroenterology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 69 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Multi-omics in Crohn's disease: New insights from inside.Computational and structural biotechnology journal · 2023
    Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. NFnetFu: A novel workflow for microbiome data fusion.Computers in biology and medicine · 2021
    Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Frontiers in pharmacology · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Jonathan P SegalInflammatory Bowel Disease Department, St Mark's Hospital, Harrow HA1 3UJ, UK.
Benjamin H MullishDivision of Integrative Systems Medicine and Digestive Disease, Department of Surgery and Cancer, Faculty of Medicine, Imperial College London, UK.
Mohammed Nabil QuraishiInstitute of Immunology and Immunotherapy, University of Birmingham, Department of Gastroenterology, University Hospital, Birmingham, UK.
Animesh AcharjeeCollege of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, Centre for Computational Biology, University of Birmingham, Birmingham, UK.
Horace R T WilliamsDivision of Integrative Systems Medicine and Digestive Disease, Department of Surgery and Cancer, Faculty of Medicine, Imperial College London, UK.
Tariq IqbalInstitute of Immunology and Immunotherapy, University of Birmingham, Department of Gastroenterology, University Hospital, Birmingham, UK.
Ailsa L HartInflammatory Bowel Disease Department, St Mark's Hospital, Harrow, UK.
Julian R MarchesiDepartment of Surgery and Cancer, Division of Integrative Systems Medicine and Digestive Disease, Faculty of Medicine, Imperial College, London, UK.
Imperial College London · GBUniversity of Birmingham · GBCardiff University · GBNIHR Surgical Reconstruction and Microbiology Research Centre · GBSt Mark's Hospital · GB

Funding

Department of Health EME/13/179/01Medical Research Council MR/R000875/1
6 · The paper itself

Abstract

The aetiopathogenesis of inflammatory bowel diseases (IBD) involves the complex interaction between a patient's genetic predisposition, environment, gut microbiota and immune system. Currently, however, it is not known if the distinctive perturbations of the gut microbiota that appear to accompany both Crohn's disease and ulcerative colitis are the cause of, or the result of, the intestinal inflammation that characterizes IBD. With the utilization of novel systems biology technologies, we can now begin to understand not only details about compositional changes in the gut microbiota in IBD, but increasingly also the alterations in microbiota function that accompany these. Technologies such as metagenomics, metataxomics, metatranscriptomics, metaproteomics and metabonomics are therefore allowing us a deeper understanding of the role of the microbiota in IBD. Furthermore, the integration of these systems biology technologies through advancing computational and statistical techniques are beginning to understand the microbiome interactions that both contribute to health and diseased states in IBD. This review aims to explore how such systems biology technologies are advancing our understanding of the gut microbiota, and their potential role in delineating the aetiology, development and clinical care of IBD.

Indexed as

bioinformaticsgenomicsgut microbiotainflammatory bowel diseasesinteractomemetagenomicsmetatranscriptomics metabonomicsproteomics

Identifiers

PMID30719076
PMCPMC6348496
OpenAlexW2912601788

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.