Evidence map›Paper›PMID 30718914›Full record

ArticleNature immunology2019

An essential role for the Zn

Consuelo Anzilotti, David J Swan, Bertrand Boisson, Mukta Deobagkar-Lele, Catarina Oliveira, Pauline Chabosseau, Karin R Engelhardt, Xijin Xu, Rui Chen, Luis Alvarez and 35 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed, 1 pooled it
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 1 synthesis or guideline pooled it, 129 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. The role of metal ions iron, copper, and zinc in the immune microenvironment of gastric cancer.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2026
    Review
  7. Article
  8. ZIP3 is essential for the encephalitogenic function of pTh17 cells by regulating intracellular zinc levels.Journal of trace elements in medicine and biology : organ of the Society for Minerals and Trace Elements (GMS) · 2026
    Article
  9. Review
  10. Article
  11. Review
  12. Review
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  14. Review
  15. Article
  16. Article
  17. Article
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  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

45 authors at 16 institutions in 6 countries.

Consuelo AnzilottiMRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-4528-0651
David J SwanPrimary Immunodeficiency Group, Institute of Cellular Medicine, Newcastle University, Newcastle upon Tyne, UK.
Bertrand BoissonSt Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY, USA.ORCID http://orcid.org/0000-0001-5240-3555
Mukta Deobagkar-LeleMRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-8543-6801
Catarina OliveiraWellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-9060-5112
Pauline ChabosseauSection of Cell Biology and Functional Genomics, Division of Diabetes, Endocrinology and Metabolism, Department of Medicine, Imperial College, London, UK.
Karin R EngelhardtPrimary Immunodeficiency Group, Institute of Cellular Medicine, Newcastle University, Newcastle upon Tyne, UK.
Xijin XuMRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Rui ChenPrimary Immunodeficiency Group, Institute of Cellular Medicine, Newcastle University, Newcastle upon Tyne, UK.
Luis AlvarezWellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-1316-1906
Rolando Berlinguer-PalminiBioimaging Unit, Newcastle University Medical School, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-1786-496X
Katherine R BullMRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Eleanor CawthorneMRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Adam P CribbsMRC WIMM Centre for Computational Biology, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Tanya L CrockfordMRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Tarana Singh DangPrimary Immunodeficiency Group, Institute of Cellular Medicine, Newcastle University, Newcastle upon Tyne, UK.
Amy FearnInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, UK.
Emma J FenechLudwig Institute for Cancer Research, University of Oxford, Oxford, UK.
Sarah J de JongSt Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY, USA.
B Christoffer LagerholmMRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Cindy S MaGarvan Institute of Medical Research, Darlinghurst, New South Wales, Australia.
David SimsMRC WIMM Centre for Computational Biology, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Bert van den BergInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, UK.
Yaobo XuInstitute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK.
Andrew J CantGreat North Children's Hospital, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK.
Gary KleinerPediatric Allergy and Immunology, University of Miami Miller School of Medicine, Miami, FL, USA.
T Ronan LeahyPaediatric Immunology and Infectious Diseases, Our Lady's Children's Hospital, Crumlin, Dublin, Ireland.
M Teresa de la MorenaDivision of Immunology, Department of Pediatrics, University of Washington and Seattle Children's Hospital, Seattle, WA, USA.
Jennifer M PuckDepartment of Pediatrics, Division of Allergy, Immunology, and Blood and Bone Marrow Transplantation, University of California, San Francisco, CA, USA.
Ralph S ShapiroMidwest Immunology Clinic, Plymouth, MN, USA.
Mirjam van der BurgDepartment of Immunology, Erasmus University Medical Centre, Rotterdam, the Netherlands.
J Ross ChapmanWellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
John C ChristiansonLudwig Institute for Cancer Research, University of Oxford, Oxford, UK.
Benjamin DaviesWellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-3623-600X
John A McGrathSt John's Institute of Dermatology, King's College London, London, UK.ORCID http://orcid.org/0000-0002-3708-9964
Stefan PrzyborskiDepartment of Biosciences, Durham University, Durham, UK.
Mauro Santibanez KorefInstitute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK.
Stuart G TangyeGarvan Institute of Medical Research, Darlinghurst, New South Wales, Australia.ORCID http://orcid.org/0000-0002-5360-5180
Andreas WernerInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, UK.
Guy A RutterSection of Cell Biology and Functional Genomics, Division of Diabetes, Endocrinology and Metabolism, Department of Medicine, Imperial College, London, UK.
Sergi Padilla-ParraWellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Jean-Laurent CasanovaSt Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY, USA.
Richard J CornallMRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK. richard.cornall@ndm.ox.ac.uk.ORCID http://orcid.org/0000-0002-6213-3269
Mary Ellen ConleySt Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY, USA. conley.maryellen@gmail.com.ORCID http://orcid.org/0000-0003-1933-0723
Sophie HambletonPrimary Immunodeficiency Group, Institute of Cellular Medicine, Newcastle University, Newcastle upon Tyne, UK. sophie.hambleton@newcastle.ac.uk.ORCID http://orcid.org/0000-0001-7954-3267
University of Oxford · GBNewcastle University · GBCentre for Human Genetics · GBGarvan Institute of Medical Research · AUGenomics (United Kingdom) · GBNewcastle upon Tyne Hospitals NHS Foundation Trust · GBRockefeller University · USChildren's Health Ireland at Crumlin · IEDurham University · GBHoward Hughes Medical Institute · USIkerbasque · ESInserm · FRKing's College London · GBSeattle Children's Hospital · USUniversity of California, San Francisco · USUniversity of Miami · US

Funding

Regulation of IgA class switching in the intestinal mucosaP01AI061093 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI CUNNINGHAM-RUNDLES, CHARLOTTE · 2004 to 2021
$29.8M
Genetic Etiology of Agammaglobulinemia with Absent B CellsR01AI104857 · NIAID · ROCKEFELLER UNIVERSITY · PI CONLEY, MARY ELLEN · 2014 to 2015
$792k
Cancer Research UK 19270Howard Hughes Medical InstituteMedical Research Council MC_PC_15065Medical Research Council MC_UU_00008/6Medical Research Council MR/K001981/1Medical Research Council MR/K023667/1Medical Research Council MR/L001209/1Medical Research Council MR/L020149/1Medical Research Council MR/L02036X/1Medical Research Council MR/M009971/1Medical Research Council MR/M012646/1Medical Research Council MR/N00275X/1Medical Research Council MR/N020472/1Medical Research Council MR/R007748/1Medical Research Council MR/R010676/1Medical Research Council MR/R017549/1NIAID NIH HHS P01 AI061093NIAID NIH HHS R01 AI104857
6 · The paper itself

Abstract

Despite the known importance of zinc for human immunity, molecular insights into its roles have remained limited. Here we report a novel autosomal recessive disease characterized by absent B cells, agammaglobulinemia and early onset infections in five unrelated families. The immunodeficiency results from hypomorphic mutations of SLC39A7, which encodes the endoplasmic reticulum-to-cytoplasm zinc transporter ZIP7. Using CRISPR-Cas9 mutagenesis we have precisely modeled ZIP7 deficiency in mice. Homozygosity for a null allele caused embryonic death, but hypomorphic alleles reproduced the block in B cell development seen in patients. B cells from mutant mice exhibited a diminished concentration of cytoplasmic free zinc, increased phosphatase activity and decreased phosphorylation of signaling molecules downstream of the pre-B cell and B cell receptors. Our findings highlight a specific role for cytosolic Zn

Indexed as

AgammaglobulinemiaAnimalsB-LymphocytesCation Transport ProteinsChild, PreschoolCytosolDisease Models, AnimalEndoplasmic ReticulumFemaleGene Expression ProfilingHumansInfantMaleMice, Inbred C57BLMice, TransgenicMutationCation Transport ProteinsSLC39A7 protein, humanZinc

Identifiers

PMID30718914
PMCPMC6561116
OpenAlexW2914756953

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.