Evidence map›Paper›PMID 30718621›Full record

ArticleScientific reports2019

Telencephalon transcriptome analysis of chronically stressed adult zebrafish.

Victoria Huang, Anderson A Butler, Farah D Lubin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Multiple faces of stress in the zebrafish (Frontiers in physiology · 2024
    Article
  8. Article
  9. Current State of Modeling Human Psychiatric Disorders Using Zebrafish.International journal of molecular sciences · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Victoria HuangDepartment of Neurobiology, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.
Anderson A ButlerDepartment of Neurobiology, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.
Farah D LubinDepartment of Neurobiology, University of Alabama at Birmingham, Birmingham, AL, 35294, USA. flubin@uab.edu.
University of Alabama at Birmingham · US

Funding

Mentored Experiences in Research, Instruction and Teaching (MERIT) Program - administrative supplementK12GM088010 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SCHNEIDER, DAVID ALAN · 2009 to 2024
$9.2M
UAB Neuroscience Core CenterP30NS047466 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BRITT, WILLIAM JARVIS · 2005 to 2019
$8.5M
UAB Research Training Program in Neurobiology of Cognition and Cognitive DisordersT32NS061788 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Farah Dominique Lubin · 2008 to 2026
$4.5M
Chromatin remodeling mechanisms of gene transcription in memoryR01MH097909 · NIMH · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LUBIN, FARAH DOMINIQUE · 2012 to 2016
$1.9M
Chromatin Remodeling Mechanism of Gene Transcription in MemoryR56MH097909 · NIMH · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LUBIN, FARAH DOMINIQUE · 2018 to 2018
$502k
NIGMS NIH HHS K12 GM088010NIMH NIH HHS R01 MH097909NIMH NIH HHS R56 MH097909NINDS NIH HHS P30 NS047466NINDS NIH HHS T32 NS061788
6 · The paper itself

Abstract

Chronic stress leads to disruptions in learning and memory processes. The effects of chronic stress experience on the adult zebrafish brain, particularly the memory associated telencephalon brain region, is unclear. The goal of this study was to identify gene expression changes in the adult zebrafish brain triggered by chronic unpredictable stress. Transcriptome analysis of the telencephalon revealed 155 differentially expressed genes. Of these genes, some are critical genes involved in learning and memory, such as cdk5 and chrna7, indicating effects of chronic unpredictable stress on zebrafish memory. Interestingly, several genes were annotated in the Orange domain, which is an amino acid sequence present in eukaryotic DNA-binding transcription repressors. Furthermore, we identified hsd11b2, a cortisol inactivating gene, as chronic stress-responsive in the whole zebrafish brain. Collectively, these findings suggest that memory associated gene expression changes in adult zebrafish telencephalon are affected by chronic stress experience.

Indexed as

Gene Expression ProfilingAgingAnimalsChronic DiseaseFemaleGene Expression Regulation, DevelopmentalGene OntologyHydrocortisoneMaleMolecular Sequence AnnotationStress, PhysiologicalTelencephalonTranscriptomeZebrafishHydrocortisone

Identifiers

PMID30718621
PMCPMC6361922
OpenAlexW2914561982

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.