Evidence map›Paper›PMID 30717823›Full record

ArticleeLife2019

Spatial and temporal organization of RecA in the

Harshad Ghodke, Bishnu P Paudel, Jacob S Lewis, Slobodan Jergic, Kamya Gopal, Zachary J Romero, Elizabeth A Wood, Roger Woodgate, Michael M Cox, Antoine M van Oijen

Abstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Purification and In Vitro Analysis of Escherichia coli RecN.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. The expression regulation ofFrontiers in microbiology · 2025
    Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Generation and Repair of Postreplication Gaps in Escherichia coli.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  20. International journal of molecular sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Harshad GhodkeMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.ORCID 0000-0002-6628-876X
Bishnu P PaudelMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.ORCID 0000-0003-3518-3882
Jacob S LewisMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.ORCID 0000-0002-9945-6133
Slobodan JergicMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.ORCID 0000-0001-5252-0815
Kamya GopalDepartment of Biochemistry, University of Wisconsin-Madison, Madison, United States.ORCID 0000-0002-8305-8384
Zachary J RomeroDepartment of Biochemistry, University of Wisconsin-Madison, Madison, United States.
Elizabeth A WoodDepartment of Biochemistry, University of Wisconsin-Madison, Madison, United States.
Roger WoodgateLaboratory of Genomic Integrity, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.ORCID 0000-0001-5581-4616
Michael M CoxDepartment of Biochemistry, University of Wisconsin-Madison, Madison, United States.ORCID 0000-0003-3606-5722
Antoine M van OijenIllawarra Health and Medical Research Institute, Wollongong, Australia.ORCID 0000-0002-1794-5161

Funding

DNA Replication, Repair, and Mutagenesis In Eukaryotic And Prokaryotic CellsZIAHD001500 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI WOODGATE, ROGER · 2009 to 2025
$37.5M
THE BIOCHEMISTRY OF GENETIC RECOMBINATION/RECA PROTEINR01GM032335 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COX, MICHAEL M. · 1985 to 2014
$6.8M
Mechanisms and applications of recombinational DNA repairU01GM032335 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COX, MICHAEL M. · 2015 to 2018
$1.7M
Australian Research Council DP150100956Australian Research Council DP180100858Australian Research Council FL140100027NIGMS NIH HHS R01 GM032335NIGMS NIH HHS U01 GM032335NIH HHS GM32335NIH HHS Intramural Research ProgramNIH HHS U01 GM32335
6 · The paper itself

Abstract

The RecA protein orchestrates the cellular response to DNA damage via its multiple roles in the bacterial SOS response. Lack of tools that provide unambiguous access to the various RecA states within the cell have prevented understanding of the spatial and temporal changes in RecA structure/function that underlie control of the damage response. Here, we develop a monomeric C-terminal fragment of the λ repressor as a novel fluorescent probe that specifically interacts with RecA filaments on single-stranded DNA (RecA*). Single-molecule imaging techniques in live cells demonstrate that RecA is largely sequestered in storage structures during normal metabolism. Upon DNA damage, the storage structures dissolve and the cytosolic pool of RecA rapidly nucleates to form early SOS-signaling complexes, maturing into DNA-bound RecA bundles at later time points. Both before and after SOS induction, RecA* largely appears at locations distal from replisomes. Upon completion of repair, RecA storage structures reform.

Indexed as

DNA DamageDNA RepairDNA, BacterialDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsIntravital MicroscopyRec A RecombinasesSOS Response, GeneticsSpatio-Temporal AnalysisDNA, BacterialDNA-Binding ProteinsEscherichia coli ProteinsrecA protein, E coliRec A RecombinasesDNA damageDNA repair intermediatesE. colilive cell imagingmolecular biophysicsphysics of living systemsRecAsingle molecule imagingSOS responsestructural biology

Identifiers

PMID30717823
PMCPMC6363387

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.