Evidence map›Paper›PMID 30717652›Full record

ArticleBMC bioinformatics2019

Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions.

Ronesh Sharma, Alok Sharma, Ashwini Patil, Tatsuhiko Tsunoda

Abstract read
In one paragraph

Article in BMC bioinformatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Intrinsically Disordered Proteins: An Overview.International journal of molecular sciences · 2022
    Review
  6. Review
  7. Article
  8. Analyzing IDPs in Interactomes.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ronesh SharmaSchool of Engineering and Physics, The University of the South Pacific, Suva, Fiji. sharmaronesh@yahoo.com.ORCID http://orcid.org/0000-0002-7460-6692
Alok SharmaSchool of Engineering and Physics, The University of the South Pacific, Suva, Fiji.
Ashwini PatilHuman Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan.
Tatsuhiko TsunodaLaboratory of Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMolecular Recognition Features (MoRFs) are short protein regions present in intrinsically disordered protein (IDPs) sequences. MoRFs interact with structured partner protein and upon interaction, they undergo a disorder-to-order transition to perform various biological functions. Analyses of MoRFs are important towards understanding their function.

resultsPerformance is reported using the MoRF dataset that has been previously used to compare the other existing MoRF predictors. The performance obtained in this study is equivalent to the benchmarked OPAL predictor, i.e., OPAL achieved AUC of 0.815, whereas the model in this study achieved AUC of 0.819 using TEST set.

conclusionAchieving comparable performance, the proposed method can be used as an alternative approach for MoRF prediction.

Indexed as

Amino Acid SequenceArea Under CurveComputational BiologyDatabases, ProteinIntrinsically Disordered ProteinsProtein DomainsIntrinsically Disordered Proteins

Identifiers

PMID30717652
PMCPMC7653905

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.