Evidence map›Paper›PMID 30717300›Full record

ArticleGenes2019

Pipeline for the Rapid Development of Cytogenetic Markers Using Genomic Data of Related Species.

Pavel Kroupin, Victoria Kuznetsova, Dmitry Romanov, Alina Kocheshkova, Gennady Karlov, Thi Xuan Dang, Thi Mai L Khuat, Ilya Kirov, Oleg Alexandrov, Alexander Polkhovskiy and 2 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Comparative Characterization ofPlants (Basel, Switzerland) · 2023
    Article
  2. qPCR as a Selective Tool for Cytogenetics.Plants (Basel, Switzerland) · 2022
    Article
  3. Article
  4. Frontiers in plant science · 2022
    Article
  5. Development of SpecificInternational journal of molecular sciences · 2020
    Article
  6. Development of new cytogenetic markers forComparative cytogenetics · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Pavel KroupinLaboratory of Applied Genomics and Crop Breeding, All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya str. 42, Moscow 127550, Russia. pavelkroupin1985@gmail.com.ORCID 0000-0001-6858-3941
Victoria KuznetsovaLaboratory of Applied Genomics and Crop Breeding, All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya str. 42, Moscow 127550, Russia. vika-kuz367@yandex.ru.
Dmitry RomanovLaboratory of Applied Genomics and Crop Breeding, All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya str. 42, Moscow 127550, Russia. akabos1987@gmail.com.
Alina KocheshkovaCenter of Molecular Biotechnology, Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Timiryazevskaya str. 49, Moscow 127550, Russia. alina.korotaeva@gmail.com.
Gennady KarlovLaboratory of Applied Genomics and Crop Breeding, All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya str. 42, Moscow 127550, Russia. karlovg@gmail.com.ORCID 0000-0002-9016-103X
Thi Xuan DangCenter of Molecular Biotechnology, Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Timiryazevskaya str. 49, Moscow 127550, Russia. xuxu.dang91@gmail.com.
Thi Mai L KhuatCenter of Molecular Biotechnology, Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Timiryazevskaya str. 49, Moscow 127550, Russia. hoamoclantt_36@yahoo.com.
Ilya KirovLaboratory of Marker-Assisted and Genomic Selection of Plants, All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya str. 42, Moscow 127550, Russia. kirovez@gmail.com.
Oleg AlexandrovLaboratory of Plant Cell Engineering, All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya str. 42, Moscow 127550, Russia. olegsandrov@gmail.com.
Alexander PolkhovskiyCenter of Molecular Biotechnology, Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Timiryazevskaya str. 49, Moscow 127550, Russia. polkhovsky.a.w@gmail.com.
Olga RazumovaLaboratory of Applied Genomics and Crop Breeding, All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya str. 42, Moscow 127550, Russia. razumovao@gmail.com.
Mikhail DivashukLaboratory of Applied Genomics and Crop Breeding, All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya str. 42, Moscow 127550, Russia. divashuk@gmail.com.ORCID 0000-0001-6221-3659
Russian State Agrarian University - Moscow Timiryazev Agricultural Academy · RUAll-Russian Scientific Research Institute of Food Biotechnology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Repetitive DNA including tandem repeats (TRs) is a significant part of most eukaryotic genomes. TRs include rapidly evolving satellite DNA (satDNA) that can be shared by closely related species, their abundance may be associated with evolutionary divergence, and they have been widely used for chromosome karyotyping using fluorescence in situ hybridization (FISH). The recent progress in the development of whole-genome sequencing and bioinformatics tools enables rapid and cost-effective searches for TRs including satDNA that can be converted into molecular cytogenetic markers. In the case of closely related taxa, the genome sequence of one species (

Indexed as

DNA, SatelliteGenetic MarkersGenotyping TechniquesIn Situ Hybridization, FluorescencePoaceaePolymerase Chain ReactionPolyploidyTandem Repeat SequencesDNA, SatelliteGenetic Markersbioinformatics searchcytogenetic markersDNA repeatsfluorescence in situ hybridizationryesatellite DNAtandem repeatstriticalewheatwhole-genome sequencing

Identifiers

PMID30717300
PMCPMC6409974
OpenAlexW2911755426

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.