Evidence map›Paper›PMID 30717218›Full record

ArticleGenes2019

Automated Nuclear Cartography Reveals Conserved Sperm Chromosome Territory Localization across 2 Million Years of Mouse Evolution.

Benjamin Matthew Skinner, Joanne Bacon, Claudia Cattoni Rathje, Erica Lee Larson, Emily Emiko Konishi Kopania, Jeffrey Martin Good, Nabeel Ahmed Affara, Peter James Ivor Ellis

Open access · goldAbstract read
In one paragraph

Article in Genes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Benjamin Matthew SkinnerDepartment of Pathology, University of Cambridge, Cambridge, CB2 1QP, UK. bms41@cam.ac.uk.
Joanne BaconDepartment of Pathology, University of Cambridge, Cambridge, CB2 1QP, UK. jb552@cam.ac.uk.
Claudia Cattoni RathjeSchool of Biosciences, University of Kent, Canterbury, CT2 7NJ, UK. na106@cam.ac.uk.
Erica Lee LarsonDepartment of Biological Sciences, University of Denver, Denver, CO 80208, USA. erica.larson@du.edu.
Emily Emiko Konishi KopaniaDivision of Biological Sciences, University of Montana, MT 59812, USA. emily.kopania@umconnect.umt.edu.
Jeffrey Martin GoodDivision of Biological Sciences, University of Montana, MT 59812, USA. erica.larson@du.edu.
Nabeel Ahmed AffaraDepartment of Pathology, University of Cambridge, Cambridge, CB2 1QP, UK. na106@cam.ac.uk.
Peter James Ivor EllisSchool of Biosciences, University of Kent, Canterbury, CT2 7NJ, UK. P.J.I.Ellis@kent.ac.uk.
University of Cambridge · GBUniversity of Kent · GBUniversity of Montana · USUniversity of Denver · US

Funding

Evolutionary and Functional Genetics of Male Reproduction using Wild Mice as a MoR01GM098536 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DEAN, MATTHEW D · 2012 to 2016
$1.5M
Meiotic sex chromosome inactivation and the developmental basis of hybrid male stR01HD073439 · NICHD · UNIVERSITY OF MONTANA · PI GOOD, JEFFREY · 2012 to 2016
$1.5M
The evolution of genomic imprintingR01HD094787 · NICHD · UNIVERSITY OF MONTANA · PI GOOD, JEFFREY · 2018 to 2022
$1.5M
Biotechnology and Biological Sciences Research Council BB/N000129/1Biotechnology and Biological Sciences Research Council BB/N000463/1Eunice Kennedy Shriver National Institute of Child Health and Human Development R01-HD073439Eunice Kennedy Shriver National Institute of Child Health and Human Development R01-HD094787NICHD NIH HHS R01 HD073439NICHD NIH HHS R01 HD094787NIGMS NIH HHS R01 GM098536NIGMS NIH HHS R01-GM098536
6 · The paper itself

Abstract

Measurements of nuclear organization in asymmetric nuclei in 2D images have traditionally been manual. This is exemplified by attempts to measure chromosome position in sperm samples, typically by dividing the nucleus into zones, and manually scoring which zone a fluorescence in-situ hybridisation (FISH) signal lies in. This is time consuming, limiting the number of nuclei that can be analyzed, and prone to subjectivity. We have developed a new approach for automated mapping of FISH signals in asymmetric nuclei, integrated into an existing image analysis tool for nuclear morphology. Automatic landmark detection defines equivalent structural regions in each nucleus, then dynamic warping of the FISH images to a common shape allows us to generate a composite of the signal within the entire cell population. Using this approach, we mapped the positions of the sex chromosomes and two autosomes in three mouse lineages (

Indexed as

Evolution, MolecularAnimalsAutomationCell NucleusChromosome PaintingMaleMiceSex ChromosomesSpermatozoachromosome paintingmorphometricsnuclear organizationsperm

Identifiers

PMID30717218
PMCPMC6409866
OpenAlexW2908436809

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.