Evidence map›Paper›PMID 30717183›Full record

ArticleInternational journal of molecular sciences2019

Interaction of Halictine-Related Antimicrobial Peptides with Membrane Models.

Markéta Pazderková, Petr Maloň, Vlastimil Zíma, Kateřina Hofbauerová, Vladimír Kopecký, Eva Kočišová, Tomáš Pazderka, Václav Čeřovský, Lucie Bednárová

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Polymeric Systems as Antimicrobial or Antifouling Agents.International journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Markéta PazderkováInstitute of Physics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, 121 16 Prague 2, Czech Republic. pazderkova@karlov.mff.cuni.cz.ORCID 0000-0003-1086-4497
Petr MaloňInstitute of Physics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, 121 16 Prague 2, Czech Republic. malonp@karlov.mff.cuni.cz.ORCID 0000-0001-8886-5460
Vlastimil ZímaInstitute of Physics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, 121 16 Prague 2, Czech Republic. vlastimil.zima@gmail.com.
Kateřina HofbauerováInstitute of Physics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, 121 16 Prague 2, Czech Republic. hofbauer@karlov.mff.cuni.cz.ORCID 0000-0001-7608-793X
Vladimír KopeckýInstitute of Physics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, 121 16 Prague 2, Czech Republic. kopecky@karlov.mff.cuni.cz.ORCID 0000-0002-7331-9018
Eva KočišováInstitute of Physics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, 121 16 Prague 2, Czech Republic. kocisova@karlov.mff.cuni.cz.ORCID 0000-0001-5758-595X
Tomáš PazderkaInstitute of Physics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, 121 16 Prague 2, Czech Republic. tomas.pazderka@matfyz.cz.
Václav ČeřovskýInstitute of Organic Chemistry and Biochemistry, v.v.i., Academy of Sciences of the Czech Republic, Flemingovo náměstí 2, 166 10 Prague 6, Czech Republic. cerovsky@uochb.cas.cz.ORCID 0000-0003-4184-2848
Lucie BednárováInstitute of Organic Chemistry and Biochemistry, v.v.i., Academy of Sciences of the Czech Republic, Flemingovo náměstí 2, 166 10 Prague 6, Czech Republic. bednarova@uochb.cas.cz.ORCID 0000-0003-3367-0193

Funding

Grantová Agentura České Republiky 208/10/0376Research Projects RVO 61388963
6 · The paper itself

Abstract

We have investigated structural changes of peptides related to antimicrobial peptide Halictine-1 (HAL-1) induced by interaction with various membrane-mimicking models with the aim to identify a mechanism of the peptide mode of action and to find a correlation between changes of primary/secondary structure and biological activity. Modifications in the HAL-1 amino acid sequence at particular positions, causing an increase of amphipathicity (Arg/Lys exchange), restricted mobility (insertion of Pro) and consequent changes in antimicrobial and hemolytic activity, led to different behavior towards model membranes. Secondary structure changes induced by peptide-membrane interaction were studied by circular dichroism, infrared spectroscopy, and fluorescence spectroscopy. The experimental results were complemented by molecular dynamics calculations. An α-helical structure has been found to be necessary but not completely sufficient for the HAL-1 peptides antimicrobial action. The role of alternative conformations (such as β-sheet, PPII or 3

Indexed as

Amino Acid SequenceAnti-Bacterial AgentsAntimicrobial Cationic PeptidesHydrophobic and Hydrophilic InteractionsKineticsLipid BilayersMolecular Dynamics SimulationPermeabilityPhosphatidylcholinesPhosphatidylglycerolsProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandAnti-Bacterial AgentsAntimicrobial Cationic PeptidesLipid BilayersPhosphatidylcholinesPhosphatidylglycerolsantibacterial peptidescircular dichroismfluorescencehalictineinfrared spectroscopy

Identifiers

PMID30717183
PMCPMC6387077

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.