Evidence map›Paper›PMID 30713701›Full record

ArticleIUCrJ2019

Structure-factor amplitude reconstruction from serial femtosecond crystallography of two-dimensional membrane-protein crystals.

Cecilia M Casadei, Karol Nass, Anton Barty, Mark S Hunter, Celestino Padeste, Ching-Ju Tsai, Sébastien Boutet, Marc Messerschmidt, Leonardo Sala, Garth J Williams and 5 more

Abstract read
In one paragraph

Article in IUCrJ, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Cecilia M CasadeiPaul Scherrer Institute, 5232 Villigen PSI, Switzerland.
Karol NassPaul Scherrer Institute, 5232 Villigen PSI, Switzerland.ORCID https://orcid.org/0000-0001-8843-1566
Anton BartyCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Mark S HunterLawrence Livermore National Laboratory, 7000 East Avenue, Livermore, CA 94550, USA.
Celestino PadestePaul Scherrer Institute, 5232 Villigen PSI, Switzerland.ORCID https://orcid.org/0000-0001-7577-5781
Ching-Ju TsaiPaul Scherrer Institute, 5232 Villigen PSI, Switzerland.
Sébastien BoutetLinac Coherent Light Source, 2575 Sand Hill Road, Menlo Park, CA 94025, USA.ORCID https://orcid.org/0000-0003-3928-1244
Marc MesserschmidtLinac Coherent Light Source, 2575 Sand Hill Road, Menlo Park, CA 94025, USA.
Leonardo SalaPaul Scherrer Institute, 5232 Villigen PSI, Switzerland.
Garth J WilliamsLinac Coherent Light Source, 2575 Sand Hill Road, Menlo Park, CA 94025, USA.
Dmitry OzerovPaul Scherrer Institute, 5232 Villigen PSI, Switzerland.
Matthew ColemanLawrence Livermore National Laboratory, 7000 East Avenue, Livermore, CA 94550, USA.
Xiao-Dan LiPaul Scherrer Institute, 5232 Villigen PSI, Switzerland.
Matthias FrankLawrence Livermore National Laboratory, 7000 East Avenue, Livermore, CA 94550, USA.
Bill PedriniPaul Scherrer Institute, 5232 Villigen PSI, Switzerland.

Funding

Technology development for biological imaging with x-ray free electron lasersR01GM117342 · NIGMS · LAWRENCE LIVERMORE NATIONAL SECURITY, LLC · PI FRANK, MATTHIAS · 2016 to 2024
$4.8M
NIGMS NIH HHS R01 GM117342
6 · The paper itself

Abstract

Serial femtosecond crystallography of two-dimensional membrane-protein crystals at X-ray free-electron lasers has the potential to address the dynamics of functionally relevant large-scale motions, which can be sterically hindered in three-dimensional crystals and suppressed in cryocooled samples. In previous work, diffraction data limited to a two-dimensional reciprocal-space slice were evaluated and it was demonstrated that the low intensity of the diffraction signal can be overcome by collecting highly redundant data, thus enhancing the achievable resolution. Here, the application of a newly developed method to analyze diffraction data covering three reciprocal-space dimensions, extracting the reciprocal-space map of the structure-factor amplitudes, is presented. Despite the low resolution and completeness of the data set, it is shown by molecular replacement that the reconstructed amplitudes carry meaningful structural information. Therefore, it appears that these intrinsic limitations in resolution and completeness from two-dimensional crystal diffraction may be overcome by collecting highly redundant data along the three reciprocal-space axes, thus allowing the measurement of large-scale dynamics in pump-probe experiments.

Indexed as

free-electron lasersmembrane proteinsserial femto­second crystallographytwo-dimensional crystals

Identifiers

PMID30713701
PMCPMC6327180

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.