Evidence map›Paper›PMID 30713130›Full record

ArticleAcademic radiology2019

Automatic Breast and Fibroglandular Tissue Segmentation in Breast MRI Using Deep Learning by a Fully-Convolutional Residual Neural Network U-Net.

Yang Zhang, Jeon-Hor Chen, Kai-Ting Chang, Vivian Youngjean Park, Min Jung Kim, Siwa Chan, Peter Chang, Daniel Chow, Alex Luk, Tiffany Kwong and 1 more

Open access · greenAbstract read
In one paragraph

Article in Academic radiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 2 pooled it
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 2 syntheses or guidelines pooled it, 106 citations in OpenAlex.

  1. Pooled it
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  15. Artificial intelligence in breast cancer: application and future perspectives.Journal of cancer research and clinical oncology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 3 countries.

Yang ZhangDepartment of Radiological Sciences, John Tu and Thomas Yuen Center for Functional Onco-Imaging, University of California, 164 Irvine Hall, Irvine, CA, 92697-5020.
Jeon-Hor ChenDepartment of Radiological Sciences, John Tu and Thomas Yuen Center for Functional Onco-Imaging, University of California, 164 Irvine Hall, Irvine, CA, 92697-5020; Department of Radiology, E-Da Hospital and I-Shou University, No. 1, Yida Road, Jiaosu Village, Yanchao District, Kaohsiung, Taiwan, 8244. Electronic address: jeonhc01@gmail.com.
Kai-Ting ChangDepartment of Radiological Sciences, John Tu and Thomas Yuen Center for Functional Onco-Imaging, University of California, 164 Irvine Hall, Irvine, CA, 92697-5020.
Vivian Youngjean ParkDepartment of Radiology and Research Institute of Radiological Science, Severance Hospital, Yonsei University College of Medicine, Seoul, Republic of Korea.
Min Jung KimDepartment of Radiology and Research Institute of Radiological Science, Severance Hospital, Yonsei University College of Medicine, Seoul, Republic of Korea.
Siwa ChanDepartment of Medical Imaging, Taichung Tzu-Chi Hospital, Taichung, Taiwan.
Peter ChangDepartment of Radiological Sciences, John Tu and Thomas Yuen Center for Functional Onco-Imaging, University of California, 164 Irvine Hall, Irvine, CA, 92697-5020.
Daniel ChowDepartment of Radiological Sciences, John Tu and Thomas Yuen Center for Functional Onco-Imaging, University of California, 164 Irvine Hall, Irvine, CA, 92697-5020.
Alex LukDepartment of Radiological Sciences, John Tu and Thomas Yuen Center for Functional Onco-Imaging, University of California, 164 Irvine Hall, Irvine, CA, 92697-5020.
Tiffany KwongDepartment of Radiological Sciences, John Tu and Thomas Yuen Center for Functional Onco-Imaging, University of California, 164 Irvine Hall, Irvine, CA, 92697-5020.
Min-Ying SuDepartment of Radiological Sciences, John Tu and Thomas Yuen Center for Functional Onco-Imaging, University of California, 164 Irvine Hall, Irvine, CA, 92697-5020. Electronic address: msu@uci.edu.
University of California, Irvine · USYonsei University · KR

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
University of California Health Participation in the National COVID Cohort Collaborative (N3C)UL1TR001414 · NCATS · UNIVERSITY OF CALIFORNIA-IRVINE · PI COOPER, DAN M, VILAIN, ERIC J. · 2015 to 2023
$35.1M
Prediction of Neoadjuvant Chemo Pathological Response Using MRI MarkersR01CA127927 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI SU, MIN-YING L. · 2008 to 2017
$5.0M
Mammographic Density and Metabolic Genotyping for Predicting Cancer PrognosisR21CA208938 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI CHEN, JEON-HOR, SU, MIN-YING L. · 2017 to 2018
$370k
Volume and Morphology of Fibroglandular Tissue for Breast Cancer Risk PredictionR21CA170955 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI CHEN, JEON-HOR, SU, MIN-YING L. · 2013 to 2014
$363k
Evaluation of 3D MRI-Based Quantitative Breast Density for ChemopreventionR03CA136071 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI CHEN, JEON-HOR · 2009 to 2010
$153k
NCATS NIH HHS UL1 TR001414NCI NIH HHS P30 CA062203NCI NIH HHS R01 CA127927NCI NIH HHS R03 CA136071NCI NIH HHS R21 CA170955NCI NIH HHS R21 CA208938
6 · The paper itself

Abstract

RATIONALE AND

objectivesBreast segmentation using the U-net architecture was implemented and tested in independent validation datasets to quantify fibroglandular tissue volume in breast MRI. MATERIALS AND

methodsTwo datasets were used. The training set was MRI of 286 patients with unilateral breast cancer. The segmentation was done on the contralateral normal breasts. The ground truth for the breast and fibroglandular tissue (FGT) was obtained by using a template-based segmentation method. The U-net deep learning algorithm was implemented to analyze the training set, and the final model was obtained using 10-fold cross-validation. The independent validation set was MRI of 28 normal volunteers acquired using four different MR scanners. Dice Similarity Coefficient (DSC), voxel-based accuracy, and Pearson's correlation were used to evaluate the performance.

resultsFor the 10-fold cross-validation in the initial training set of 286 patients, the DSC range was 0.83-0.98 (mean 0.95 ± 0.02) for breast and 0.73-0.97 (mean 0.91 ± 0.03) for FGT; and the accuracy range was 0.92-0.99 (mean 0.98 ± 0.01) for breast and 0.87-0.99 (mean 0.97 ± 0.01) for FGT. For the entire 224 testing breasts of the 28 normal volunteers in the validation datasets, the mean DSC was 0.86 ± 0.05 for breast, 0.83 ± 0.06 for FGT; and the mean accuracy was 0.94 ± 0.03 for breast and 0.93 ± 0.04 for FGT. The testing results for MRI acquired using four different scanners were comparable.

conclusionDeep learning based on the U-net algorithm can achieve accurate segmentation results for the breast and FGT on MRI. It may provide a reliable and efficient method to process large number of MR images for quantitative analysis of breast density.

Indexed as

AlgorithmsDeep LearningNeural Networks, ComputerAdultBreastBreast DensityBreast NeoplasmsDisease ProgressionFemaleHumansMagnetic Resonance ImagingMiddle AgedYoung Adultbreast MRIBreast segmentationDeep learningU-net algorithm

Identifiers

PMID30713130
PMCPMC6669125
OpenAlexW2912415791

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.