Evidence map›Paper›PMID 30711748›Full record

ArticleiScience2019

Regulatory Network of the Scoliosis-Associated Genes Establishes Rostrocaudal Patterning of Somites in Zebrafish.

Sevdenur Keskin, M Fethullah Simsek, Ha T Vu, Carlton Yang, Stephen H Devoto, Ahmet Ay, Ertuğrul M Özbudak

Open access · goldAbstract read
In one paragraph

Article in iScience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Time and space in segmentation.Interface focus · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Sevdenur KeskinDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
M Fethullah SimsekDivision of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA.
Ha T VuDepartments of Biology and Mathematics, Colgate University, Hamilton, NY 13346, USA.
Carlton YangDepartments of Biology and Mathematics, Colgate University, Hamilton, NY 13346, USA.
Stephen H DevotoDepartment of Biology, Wesleyan University, Middletown, CT 06459, USA.
Ahmet AyDepartments of Biology and Mathematics, Colgate University, Hamilton, NY 13346, USA. Electronic address: aay@colgate.edu.
Ertuğrul M ÖzbudakDivision of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH 45229, USA; Department of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA. Electronic address: ertugrul.ozbudak@cchmc.org.
Colgate University · USAlbert Einstein College of Medicine · USCincinnati Children's Hospital Medical Center · USUniversity of Cincinnati Medical Center · USWesleyan University · US

Funding

Regulatory Mechanisms Governing Vertebral SegmentationR01GM111987 · NIGMS · CINCINNATI CHILDRENS HOSP MED CTR · PI OZBUDAK, ERTUGRUL M · 2014 to 2018
$1.8M
The developmental origins of vertebral defectsR15AR066284 · NIAMS · WESLEYAN UNIVERSITY · PI DEVOTO, STEPHEN HENRI · 2014 to 2014
$410k
NIAMS NIH HHS R15 AR066284NIGMS NIH HHS R01 GM111987
6 · The paper itself

Abstract

Gene regulatory networks govern pattern formation and differentiation during embryonic development. Segmentation of somites, precursors of the vertebral column among other tissues, is jointly controlled by temporal signals from the segmentation clock and spatial signals from morphogen gradients. To explore how these temporal and spatial signals are integrated, we combined time-controlled genetic perturbation experiments with computational modeling to reconstruct the core segmentation network in zebrafish. We found that Mesp family transcription factors link the temporal information of the segmentation clock with the spatial action of the fibroblast growth factor signaling gradient to establish rostrocaudal (head to tail) polarity of segmented somites. We further showed that cells gradually commit to patterning by the action of different genes at different spatiotemporal positions. Our study provides a blueprint of the zebrafish segmentation network, which includes evolutionarily conserved genes that are associated with the birth defect congenital scoliosis in humans.

Indexed as

Biological SciencesDevelopmental BiologyEmbryologyMathematical Biosciences

Identifiers

PMID30711748
PMCPMC6360518
OpenAlexW2914373737

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.