Evidence map›Paper›PMID 30710419›Full record

ArticleChembiochem : a European journal of chemical biology2019

CRISPR-Cas-Mediated Chemical Control of Transcriptional Dynamics in Yeast.

Daniel Cunningham-Bryant, Jingwen Sun, Brianna Fernandez, Jesse G Zalatan

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Engineering activatable promoters for scalable and multi-input CRISPRa/i circuits.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Recent trends in biocatalysis.Chemical Society reviews · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Daniel Cunningham-BryantDepartment of Chemistry, University of Washington, 36 Bagley Hall, Seattle, WA, 98195, USA.
Jingwen SunDepartment of Chemistry, University of Washington, 36 Bagley Hall, Seattle, WA, 98195, USA.
Brianna FernandezDepartment of Chemistry, University of Washington, 36 Bagley Hall, Seattle, WA, 98195, USA.
Jesse G ZalatanDepartment of Chemistry, University of Washington, 36 Bagley Hall, Seattle, WA, 98195, USA.ORCID 0000-0002-1458-0654
University of Washington · US

Funding

Spatial Organization in Biochemical Reaction NetworksR35GM124773 · NIGMS · UNIVERSITY OF WASHINGTON · PI Jesse George Zalatan · 2017 to 2026
$3.9M
NIGMS NIH HHS R35 GM124773
6 · The paper itself

Abstract

Synthetic CRISPR-Cas transcription factors enable the construction of complex gene-expression programs, and chemically inducible systems allow precise control over the expression dynamics. To provide additional modes of regulatory control, we have constructed a chemically inducible CRISPR activation (CRISPRa) system in yeast that is mediated by recruitment to MS2-functionalized guide RNAs. We use reporter gene assays to systematically map the dose dependence, time dependence, and reversibility of the system. Because the recruitment function is encoded at the level of the guide RNA, it is straightforward to target multiple genes and independently regulate expression dynamics at individual targets. This approach provides a new method to engineer sophisticated, multigene programs with precise control over the dynamics of gene expression.

Indexed as

CRISPR-Associated Protein 9CRISPR-Cas SystemsGene ExpressionRNA, Guide, CRISPR-Cas SystemsSaccharomyces cerevisiaeCRISPR-Associated Protein 9RNA, Guide, CRISPR-Cas SystemsCRISPR-Casgene expressionprotein-protein interactionsRNAsynthetic biology

Identifiers

PMID30710419
PMCPMC6570556
OpenAlexW2913254159

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.