Evidence map›Paper›PMID 30710231›Full record

ArticleMolecular biology reports2019

Genome-wide identification and characterization of Hsp70 gene family in Nicotiana tabacum.

Zhaopeng Song, Feilong Pan, Xiaoping Lou, Daibin Wang, Chao Yang, Baoquan Zhang, Hongying Zhang

Abstract read
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In one paragraph

Article in Molecular biology reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 65 citations in OpenAlex.

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  16. Characterization ofFrontiers in genetics · 2023
    Article
  17. Review
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  20. Seed Protection ofMicroorganisms · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Zhaopeng SongKey Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, China.
Feilong PanKey Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, China.
Xiaoping LouChina Tobacco Zhejiang Industrial Co., Ltd, Hangzhou, China.
Daibin WangChongqing Tobacco Science Research Institute, Chongqing, China.
Chao YangChongqing Tobacco Science Research Institute, Chongqing, China.
Baoquan ZhangChina Tobacco Zhejiang Industrial Co., Ltd, Hangzhou, China.
Hongying ZhangKey Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, China. zhangying198215@163.com.ORCID http://orcid.org/0000-0002-4529-5020
China Tobacco · CNHenan Agricultural University · CNTobacco Research Institute · CN

Funding

China National Tobacco Corp., Chongqing Division NY20180601070002China National Tobacco Corp., Yunnan Division 2016YN10, 2017YN19
6 · The paper itself

Abstract

Heat shock proteins 70 (Hsp70) constitute a highly conserved protein family of cellular chaperones widely distributed in plants, where they play a fundamental role in response to biotic and abiotic stress. Until now, genome-wide analyses of the Hsp70 gene family have been conducted for some species. However, reports about Hsp70 genes in Nicotiana tabacum are scarce. In this study, we systematically conducted genome-wide identification and expression analysis of the Hsp70 gene family in tobacco, including gene structure, classification, evolutionary relationships, promoters, and transcript levels in response to abiotic stress treatments. In all, 61 Hsp70 members were identified and classified into six groups that were mapped onto 18 chromosomes, where most were distributed on both ends of the chromosome. The conserved structures and motifs of NtHsp70 proteins in the same subfamily were highly consistent. At least 15 pairs of NtHsp70 genes underwent gene duplication by segment and tandem duplications. Most NtHsp70 proteins contained N-terminal hexokinase conserved motifs. Phylogenetic analysis showed that most species expanded according to their own species-specific approach during the evolution of Hsp70s. Tissue-specific expression analysis indicated that all NtHsp70 genes were involved in at least one or more abiotic stress responses, highlighting the wide participation of NtHsp70 genes in environmental adaptation. This is the first genome-wide analysis of Hsp70 in N. tabacum. These results indicate that each NtHsp70 member fulfilled distinct functions in response to various abiotic stresses.

Indexed as

Evolution, MolecularGene DuplicationGene Expression ProfilingGene Expression Regulation, PlantGenome-Wide Association StudyHSP70 Heat-Shock ProteinsMolecular ChaperonesMultigene FamilyNicotianaPhylogenyPlant ProteinsStress, PhysiologicalHSP70 Heat-Shock ProteinsMolecular ChaperonesPlant ProteinsExpression profile analysisGenome-wide analysisHeat shock protein 70Nicotiana tabacumPhylogenetic analysisSynteny analysis

Identifiers

PMID30710231
OpenAlexW2913981234

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.