Evidence map›Paper›PMID 30710081›Full record

ArticleNature communications2019

Cyanobacterial antimetabolite 7-deoxy-sedoheptulose blocks the shikimate pathway to inhibit the growth of prototrophic organisms.

Klaus Brilisauer, Johanna Rapp, Pascal Rath, Anna Schöllhorn, Lisa Bleul, Elisabeth Weiß, Mark Stahl, Stephanie Grond, Karl Forchhammer

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 81 citations in OpenAlex.

  1. Review
  2. 2-De-oxy-d-galactitol.IUCrData · 2026
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  5. A genome-widebioRxiv : the preprint server for biology · 2026
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  6. Article
  7. Article
  8. Dihydroorotate dehydrogenase as a herbicide target.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Hybrid Chemoenzymatic Synthesis of CChembiochem : a European journal of chemical biology · 2022
    Article
  14. Review
  15. Deciphering the structure ofComputational and structural biotechnology journal · 2022
    Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Heterologous production of cyanobacterial compounds.Journal of industrial microbiology & biotechnology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Klaus BrilisauerInstitute of Organic Chemistry, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 18, 72076, Tübingen, Germany.ORCID http://orcid.org/0000-0001-6849-3989
Johanna RappMicrobiology, Organismic Interactions, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 28, 72076, Tübingen, Germany.ORCID http://orcid.org/0000-0002-4591-8312
Pascal RathInstitute of Organic Chemistry, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 18, 72076, Tübingen, Germany.
Anna SchöllhornMicrobiology, Organismic Interactions, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 28, 72076, Tübingen, Germany.ORCID http://orcid.org/0000-0001-7928-7312
Lisa BleulInterfaculty Institute of Microbiology and Infection Medicine Tübingen (IMIT), Eberhard Karls Universität Tübingen, Eugenstraße 6, 72076, Tübingen, Germany.
Elisabeth WeißInterfaculty Institute of Microbiology and Infection Medicine Tübingen (IMIT), Eberhard Karls Universität Tübingen, Eugenstraße 6, 72076, Tübingen, Germany.
Mark StahlCenter for Plant Molecular Biology, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 32, 72076, Tübingen, Germany.
Stephanie GrondInstitute of Organic Chemistry, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 18, 72076, Tübingen, Germany. biomolchemie@orgchem.uni-tuebingen.de.
Karl ForchhammerMicrobiology, Organismic Interactions, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 28, 72076, Tübingen, Germany. biomolchemie@orgchem.uni-tuebingen.de.ORCID http://orcid.org/0000-0003-3199-8101
University of Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antimetabolites are small molecules that inhibit enzymes by mimicking physiological substrates. We report the discovery and structural elucidation of the antimetabolite 7-deoxy-sedoheptulose (7dSh). This unusual sugar inhibits the growth of various prototrophic organisms, including species of cyanobacteria, Saccharomyces, and Arabidopsis. We isolate bioactive 7dSh from culture supernatants of the cyanobacterium Synechococcus elongatus. A chemoenzymatic synthesis of 7dSh using S. elongatus transketolase as catalyst and 5-deoxy-D-ribose as substrate allows antimicrobial and herbicidal bioprofiling. Organisms treated with 7dSh accumulate 3-deoxy-D-arabino-heptulosonate 7-phosphate, which indicates that the molecular target is 3-dehydroquinate synthase, a key enzyme of the shikimate pathway, which is absent in humans and animals. The herbicidal activity of 7dSh is in the low micromolar range. No cytotoxic effects on mammalian cells have been observed. We propose that the in vivo inhibition of the shikimate pathway makes 7dSh a natural antimicrobial and herbicidal agent.

Indexed as

Metabolic Networks and PathwaysAnabaenaAntifungal AgentsAntimetabolitesArabidopsisCell DeathCell LineCyanobacteriaHeptosesHerbicidesMetabolomePhosphorus-Oxygen LyasesPhotosynthesisSeedlingsShikimic AcidSynechococcus3-dehydroquinate synthetaseAntifungal AgentsAntimetabolitesHeptosesHerbicidesPhosphorus-Oxygen LyasessedoheptuloseShikimic Acid

Identifiers

PMID30710081
PMCPMC6358636
OpenAlexW2914482576

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.