Evidence map›Paper›PMID 30709827›Full record

ArticleApplied and environmental microbiology2019

Primer Design for an Accurate View of Picocyanobacterial Community Structure by Using High-Throughput Sequencing.

Paula Huber, Francisco M Cornejo-Castillo, Isabel Ferrera, Pablo Sánchez, Ramiro Logares, Sebastián Metz, Vanessa Balagué, Silvia G Acinas, Josep M Gasol, Fernando Unrein

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Seasonal and Spatial Variations inFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Paula HuberInstituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús, UNSAM-CONICET, Chascomús, Buenos Aires, Argentina mariapaulahuber@gmail.com.ORCID 0000-0002-5411-7736
Francisco M Cornejo-CastilloDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar, CSIC, Barcelona, Catalunya, Spain.
Isabel FerreraDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar, CSIC, Barcelona, Catalunya, Spain.
Pablo SánchezDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar, CSIC, Barcelona, Catalunya, Spain.
Ramiro LogaresDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar, CSIC, Barcelona, Catalunya, Spain.
Sebastián MetzInstituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús, UNSAM-CONICET, Chascomús, Buenos Aires, Argentina.
Vanessa BalaguéDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar, CSIC, Barcelona, Catalunya, Spain.
Silvia G AcinasDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar, CSIC, Barcelona, Catalunya, Spain.
Josep M GasolDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar, CSIC, Barcelona, Catalunya, Spain.
Fernando UnreinInstituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús, UNSAM-CONICET, Chascomús, Buenos Aires, Argentina.
Institut Català de Ciències del Clima · ESConsejo Nacional de Investigaciones Científicas y Técnicas · AREdith Cowan University · AUInstituto Español de Oceanografía · ESUniversity of California, Santa Cruz · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High-throughput sequencing (HTS) of the 16S rRNA gene has been used successfully to describe the structure and dynamics of microbial communities. Picocyanobacteria are important members of bacterioplankton communities, and, so far, they have predominantly been targeted using universal bacterial primers, providing a limited resolution of the picocyanobacterial community structure and dynamics. To increase such resolution, the study of a particular target group is best approached with the use of specific primers. Here, we aimed to design and evaluate specific primers for aquatic picocyanobacterial genera to be used with high-throughput sequencing. Since the various regions of the 16S rRNA gene have different degrees of conservation in different bacterial groups, we therefore first determined which hypervariable region of the 16S rRNA gene provides the highest taxonomic and phylogenetic resolution for the genera

Indexed as

High-Throughput Nucleotide SequencingMicrobiotaPhylogenyArgentinaComputer SimulationCyanobacteriaDNA PrimersEcologyFresh WaterGenetic VariationProchlorococcusRNA, Ribosomal, 16SSeawaterSequence Analysis, DNASynechococcusDNA PrimersRNA, Ribosomal, 16S16S rRNA geneCyanobiumHTSprimer designProchlorococcusSynechococcus

Identifiers

PMID30709827
PMCPMC6585506
OpenAlexW2913793384

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.