Evidence map›Paper›PMID 30709826›Full record

ArticleApplied and environmental microbiology2019

Interspecies Chemical Signaling in a Methane-Oxidizing Bacterial Community.

Aaron W Puri, Darren Liu, Amy L Schaefer, Zheng Yu, Mitchell W Pesesky, E Peter Greenberg, Mary E Lidstrom

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
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  5. Article
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  8. Review
  9. Cre/Applied and environmental microbiology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Aaron W PuriDepartment of Chemical Engineering, University of Washington, Seattle, Washington, USA a.puri@utah.edu.ORCID 0000-0002-6378-678X
Darren LiuDepartment of Chemical Engineering, University of Washington, Seattle, Washington, USA.
Amy L SchaeferDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Zheng YuDepartment of Chemical Engineering, University of Washington, Seattle, Washington, USA.
Mitchell W PeseskyDepartment of Chemical Engineering, University of Washington, Seattle, Washington, USA.
E Peter GreenbergDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Mary E LidstromDepartment of Chemical Engineering, University of Washington, Seattle, Washington, USA.

Funding

QUORUM SENSING IN PSEUDOMONAS AERUGINOSAR01GM059026 · NIGMS · UNIVERSITY OF WASHINGTON · PI GREENBERG, EVERETT P · 1999 to 2019
$6.5M
Methane-Oxidizing Bacterial Communities: A Novel Source Of Bioactive Chemical DiversityK99GM118762 · NIGMS · UNIVERSITY OF WASHINGTON · PI PURI, AARON WEBSTER · 2016 to 2017
$161k
NIGMS NIH HHS K99 GM118762NIGMS NIH HHS R01 GM059026
6 · The paper itself

Abstract

Multiple species of bacteria oxidize methane in the environment after it is produced by anaerobic ecosystems. These organisms provide reduced carbon substrates for species that cannot oxidize methane themselves, thereby serving a key role in these niches while also sequestering this potent greenhouse gas before it enters the atmosphere. Deciphering the molecular details of how methane-oxidizing bacteria interact in the environment enables us to understand an important aspect that shapes the structures and functions of these communities. Here we show that many members of the

Indexed as

Signal Transduction4-ButyrolactoneBacterial ProteinsBinding SitesEcosystemEscherichia coliGene Expression Regulation, BacterialGenome, BacterialMethaneMethylococcaceaeMethylomonasMicrobiotaOxidation-ReductionQuorum SensingRepressor ProteinsTrans-Activators4-ButyrolactoneBacterial Proteinshomoserine lactoneLuxR autoinducer binding proteinsMethaneRepressor ProteinsTrans-ActivatorsTranscription Factorsacyl-homoserine lactoneLuxR solomethanemethanotrophorphan LuxRquorum sensingsociomicrobiology

Identifiers

PMID30709826
PMCPMC6585505

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.