Evidence map›Paper›PMID 30706531›Full record

ArticleAnnals of neurology2019

Variation in SIPA1L2 is correlated with phenotype modification in Charcot- Marie- Tooth disease type 1A.

Feifei Tao, Gary W Beecham, Adriana P Rebelo, John Svaren, Susan H Blanton, John J Moran, Camila Lopez-Anido, Jasper M Morrow, Lisa Abreu, Devon Rizzo and 20 more

Open access · greenAbstract read
In one paragraph

Article in Annals of neurology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Charcot-Marie-Tooth disease and related neuropathies.Nature reviews. Disease primers · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Peripheral Nervous System (PNS) Myelin Diseases.Cold Spring Harbor perspectives in biology · 2024
    Review
  10. Article
  11. Testing SIPA1L2 as a modifier of CMT1A using mouse models.Journal of neuropathology and experimental neurology · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Mechanisms and Treatments in Demyelinating CMT.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 18 institutions in 5 countries.

Feifei TaoDepartment for Human Genetics and Hussman Institute for Human Genomics, University of Miami, Miami, FL.
Gary W BeechamDepartment for Human Genetics and Hussman Institute for Human Genomics, University of Miami, Miami, FL.
Adriana P RebeloDepartment for Human Genetics and Hussman Institute for Human Genomics, University of Miami, Miami, FL.
John SvarenDepartment of Comparative Biosciences and Waisman Center, University of Wisconsin, Madison, WI.
Susan H BlantonDepartment for Human Genetics and Hussman Institute for Human Genomics, University of Miami, Miami, FL.
John J MoranDepartment of Comparative Biosciences and Waisman Center, University of Wisconsin, Madison, WI.
Camila Lopez-AnidoDepartment of Comparative Biosciences and Waisman Center, University of Wisconsin, Madison, WI.
Jasper M MorrowMedical Research Council Centre for Neuromuscular Diseases, University College London Institute of Neurology, London, United Kingdom.
Lisa AbreuDepartment for Human Genetics and Hussman Institute for Human Genomics, University of Miami, Miami, FL.
Devon RizzoData Management and Coordinating Center, Rare Diseases Clinical Research Network, Pediatrics Epidemiology Center, University of South Florida, Tampa, FL.
Callyn A KirkData Management and Coordinating Center, Rare Diseases Clinical Research Network, Pediatrics Epidemiology Center, University of South Florida, Tampa, FL.
Xingyao WuDepartment of Neurology, University of Iowa, Iowa City, IA.
Shawna FeelyDepartment of Neurology, University of Iowa, Iowa City, IA.
Camiel VerhammeDepartment of Neurology, Academic Medical Center, Amsterdam, the Netherlands.
Mario A SaportaDepartment of Neurology, University of Miami, Miami, FL.
David N HerrmannDepartment of Neurology, University of Rochester, Rochester, NY.
John W DayDepartment of Neurology, Stanford University, Palo Alto, CA.
Charlotte J SumnerDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD.
Thomas E LloydDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD.
Jun LiDepartment of Neurology, Wayne State University School of Medicine, Detroit, MI.
Sabrina W YumDivision of Neurology, Children's Hospital of Philadelphia, Philadelphia, PA.
Franco TaroniIstituto di Ricovero e Cura a Carattere Scientifico (IRCCS), Foundation Carlo Besta Neurological Institute, Milan, Italy.
Frank BaasDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, the Netherlands.
Byung-Ok ChoiDepartment of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea.
Davide PareysonIstituto di Ricovero e Cura a Carattere Scientifico (IRCCS), Foundation Carlo Besta Neurological Institute, Milan, Italy.
Steven S SchererDepartment of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA.
Mary M ReillyMedical Research Council Centre for Neuromuscular Diseases, University College London Institute of Neurology, London, United Kingdom.
Michael E ShyDepartment of Neurology, University of Iowa, Iowa City, IA.
Stephan ZüchnerDepartment for Human Genetics and Hussman Institute for Human Genomics, University of Miami, Miami, FL.
Inherited Neuropathy Consortium
University of Miami · USCenter for Human Genetics · USUniversity of Iowa · USUniversity of Wisconsin–Madison · USMedical Research Council · GBUniversity of South Florida · USAcademic Medical Center · NLChildren's Hospital of Philadelphia · USFondazione IRCCS Istituto Neurologico Carlo Besta · ITIstituti di Ricovero e Cura a Carattere Scientifico · ITJohns Hopkins Medicine · USJohns Hopkins University · USLeiden University Medical Center · NLPalo Alto University · USSamsung Medical Center · KRUniversity of Pennsylvania · USUniversity of Rochester · USWayne State University · US

Funding

trainingU54NS065712 · NINDS · WAYNE STATE UNIVERSITY · PI SHY, MICHAEL E. · 2009 to 2023
$19.6M
Waisman Intellectual and Developmental Disabilities Research Center Down Syndrome RegistryU54HD090256 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI POLLAK, SETH D · 2016 to 2020
$6.0M
Institutional Career Development CoreKL2TR002737 · NCATS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI RUNDEK, TATJANA, SCOTT, GWENDOLYN BARBARA · 2018 to 2022
$3.6M
Pathophysiology of Conduction Block in HNPP.R01NS066927 · NINDS · WAYNE STATE UNIVERSITY · PI LI, JUN · 2010 to 2019
$3.5M
Axonal Injury in Demyelinating DiseaseR01NS043174 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI SCHERER, STEVEN SIMON · 2002 to 2011
$3.1M
Genomic Studies in Charcot-Marie-Tooth DiseaseR01NS075764 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SHY, MICHAEL E., ZUCHNER, STEPHAN · 2012 to 2016
$3.0M
TISSUE ENGINEERED HUMAN NEUROMUSCULAR JUNCTIONS FOR MODELING AXONAL NEUROPATHYR01NS094388 · NINDS · UNIVERSITY OF WASHINGTON · PI KIM, DEOK-HO · 2017 to 2021
$1.7M
Epigenetic Regulation of Peripheral Nerve MyelinationR01NS075269 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI SVAREN, JOHN P · 2011 to 2015
$1.5M
Charcot-Marie-Tooth AssociationMedical Research Council G0601943Muscular Dystrophy AssociationNational Institute for Health Research University College London Hospitals Biomedical Research CentreNational Institutes of Neurological Diseases and StrokeNCATS NIH HHS KL2 TR002737NICHD NIH HHS U54 HD090256NIH HHS R01NS43174NIH National Institute of Neurological Diseases and StrokeNINDS NIH HHS R01 NS043174NINDS NIH HHS R01 NS066927NINDS NIH HHS R01 NS075269NINDS NIH HHS R01 NS075764NINDS NIH HHS R01 NS094388NINDS NIH HHS U54 NS065712
6 · The paper itself

Abstract

objectiveGenetic modifiers in rare disease have long been suspected to contribute to the considerable variance in disease expression, including Charcot-Marie-Tooth disease type 1A (CMT1A). To address this question, the Inherited Neuropathy Consortium collected a large standardized sample of such rare CMT1A patients over a period of 8 years. CMT1A is caused in most patients by a uniformly sized 1.5 Mb duplication event involving the gene PMP22.

methodsWe genotyped DNA samples from 971 CMT1A patients on Illumina BeadChips. Genome-wide analysis was performed in a subset of 330 of these patients, who expressed the extremes of a hallmark symptom: mild and severe foot dorsiflexion strength impairment. SIPA1L2 (signal-induced proliferation-associated 1 like 2), the top identified candidate modifier gene, was expressed in the peripheral nerve, and our functional studies identified and confirmed interacting proteins using coimmunoprecipitation analysis, mass spectrometry, and immunocytochemistry. Chromatin immunoprecipitation and in vitro siRNA experiments were used to analyze gene regulation.

resultsWe identified significant association of 4 single nucleotide polymorphisms (rs10910527, rs7536385, rs4649265, rs1547740) in SIPA1L2 with foot dorsiflexion strength (p < 1 × 10

interpretationSIPA1L2 is a potential genetic modifier of CMT1A phenotypic expressions and offers a new pathway to therapeutic interventions. ANN NEUROL 2019;85:316-330.

Indexed as

AdolescentAdultAgedAged, 80 and overAnimalsCell Line, TumorCharcot-Marie-Tooth DiseaseChildChild, PreschoolFemaleFootGene Expression RegulationGene Knockdown TechniquesGene Regulatory NetworksGenes, ModifierGTPase-Activating ProteinsGTPase-Activating ProteinsMyelin ProteinsPMP22 protein, humanPmp22 protein, ratSIPA1L2 protein, humanSipa1l2 protein, rat

Identifiers

PMID30706531
PMCPMC7263419
OpenAlexW2913027812

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.