Evidence map›Paper›PMID 30706286›Full record

ArticlePlant molecular biology2019

Interaction of roses with a biotrophic and a hemibiotrophic leaf pathogen leads to differences in defense transcriptome activation.

Enzo Neu, Helena Sophia Domes, Ina Menz, Helgard Kaufmann, Marcus Linde, Thomas Debener

Open access · hybridAbstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

  1. Plants (Basel, Switzerland) · 2024
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  13. Recent Progress in Enhancing Fungal Disease Resistance in Ornamental Plants.International journal of molecular sciences · 2021
    Review
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  15. Article
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Enzo NeuDepartment of Molecular Plant Breeding, Institute for Plant Genetics, Leibniz Universität Hannover, 30419, Hannover, Germany.ORCID http://orcid.org/0000-0003-1314-4823
Helena Sophia DomesDepartment of Molecular Plant Breeding, Institute for Plant Genetics, Leibniz Universität Hannover, 30419, Hannover, Germany.
Ina MenzDepartment of Molecular Plant Breeding, Institute for Plant Genetics, Leibniz Universität Hannover, 30419, Hannover, Germany.
Helgard KaufmannDepartment of Molecular Plant Breeding, Institute for Plant Genetics, Leibniz Universität Hannover, 30419, Hannover, Germany.
Marcus LindeDepartment of Molecular Plant Breeding, Institute for Plant Genetics, Leibniz Universität Hannover, 30419, Hannover, Germany.
Thomas DebenerDepartment of Molecular Plant Breeding, Institute for Plant Genetics, Leibniz Universität Hannover, 30419, Hannover, Germany. debener@genetik.uni-hannover.de.
Leibniz University Hannover · DE

Funding

Deutsche Forschungsgemeinschaft GRK1798Deutsche Forschungsgemeinschaft GRK1798/1
6 · The paper itself

Abstract

key messageTranscriptomic analysis resulted in the upregulation of the genes related to common defense mechanisms for black spot and the downregulation of the genes related to photosynthesis and cell wall modification for powdery mildew. Plant pathogenic fungi successfully colonize their hosts by manipulating the host defense mechanisms, which is accompanied by major transcriptome changes in the host. To characterize compatible plant pathogen interactions at early stages of infection by the obligate biotrophic fungus Podosphaera pannosa, which causes powdery mildew, and the hemibiotrophic fungus Diplocarpon rosae, which causes black spot, we analyzed changes in the leaf transcriptome after the inoculation of detached rose leaves with each pathogen. In addition, we analyzed differences in the transcriptomic changes inflicted by both pathogens as a first step to characterize specific infection strategies. Transcriptomic changes were analyzed using next-generation sequencing based on the massive analysis of cDNA ends approach, which was validated using high-throughput qPCR. We identified a large number of differentially regulated genes. A common set of the differentially regulated genes comprised of pathogenesis-related (PR) genes, such as of PR10 homologs, chitinases and defense-related transcription factors, such as various WRKY genes, indicating a conserved but insufficient PTI [pathogen associated molecular pattern (PAMP) triggered immunity] reaction. Surprisingly, most of the differentially regulated genes were specific to the interactions with either P. pannosa or D. rosae. Specific regulation in response to D. rosae was detected for genes from the phenylpropanoid and flavonoid pathways and for individual PR genes, such as paralogs of PR1 and PR5, and other factors of the salicylic acid signaling pathway. Differently, inoculation with P. pannosa leads in addition to the general pathogen response to a downregulation of genes related to photosynthesis and cell wall modification.

Indexed as

Arabidopsis ProteinsAscomycotaChitinasesFlavonoidsGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantHigh-Throughput Nucleotide SequencingHost-Pathogen InteractionsImmunityPathogen-Associated Molecular Pattern MoleculesPlant DiseasesPlant Growth RegulatorsPlant LeavesPlant ProteinsRosaArabidopsis ProteinsChitinasesFlavonoidsPathogen-Associated Molecular Pattern MoleculesPlant Growth RegulatorsPlant ProteinsSalicylic AcidTranscription FactorsWRKY57 protein, ArabidopsisBlack spotHigh-throughput qPCRMACE analysisPowdery mildewPR genesWRKY genes

Identifiers

PMID30706286
OpenAlexW2913122864

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.