Evidence map›Paper›PMID 30706083›Full record

ArticleCurrent microbiology2019

Complete Genome Sequence of Streptomyces olivoreticuli ATCC 31159 Which can Produce Anticancer Bestatin and Show Diverse Secondary Metabolic Potentials.

Hong Yu Zhang, Ze Ping Xie, Ting Ting Lou, Su Ying Wang

Abstract read
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In one paragraph

Article in Current microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Hong Yu ZhangTianjin Key Laboratory of Food Biotechnology, College of Biotechnology and Food Science, Tianjin University of Commerce, No.409 Guangrong Road, Beichen District, Tianjin, 300134, China. z_pillar@126.com.ORCID http://orcid.org/0000-0001-5006-1133
Ze Ping XieCollege of Pharmacy, Binzhou Medical University, Yantai, 264003, China.
Ting Ting LouTianjin Entry & Exit Inspection and Quarantine Bureau, Tianjin, 300461, China.
Su Ying WangTianjin Key Laboratory of Food Biotechnology, College of Biotechnology and Food Science, Tianjin University of Commerce, No.409 Guangrong Road, Beichen District, Tianjin, 300134, China. wsying@tjcu.edu.cn.
Tianjin University of Commerce · CNBinzhou Medical University · CNEntry Exit Inspection and Quarantine Bureau · CN

Funding

Innovation Team Project for Colleges and Universities in Tianjin city TD13-5087National Training Program of Innovation and Entrepreneurship for Undergraduates 201710069036Science & Technology Development Foundation of the University of Tianjin Municipal City 20170619The Breeding Project of National Natural Science Fund of China 17103-60104-2017ZT010503
6 · The paper itself

Abstract

Because of its competitive inhibitor activity against aminopeptidase B, bestatin isolated from the broth of Streptomyces olivoreticuli ATCC 31159 is famous and currently used as an approved therapeutic agent for cancer and bacterial infections. It can be used alone or in combination with other antibiotics or anticancer drugs as adjuvant therapy drug for chemotherapy and radiotherapy. Due to the therapeutic importance of bestatin, mining of its biosynthetic mechanism is imperative. Genome mining, one of the bioinformatics-based approaches for the discovery of novel natural product, has been developed and applied widely. Herein, we reported the complete genome of Streptomyces olivoreticuli ATCC 31159 obtained from American Type Culture Collection (ATCC). It consists of 8,809,793 base pairs with a linear chromosome, GC content of 71.1%, 7520 protein-coding genes, 75 tRNA operons, 21 rRNA operons, 63 sRNAs. In addition, predictive analysis showed that at least 37 putative biosynthetic gene clusters (BGCs) of the secondary metabolites were obtained, 18 new BGCs with low similarity (< 25%) were included. The availability of novel and abundant gene clusters not only will provide clues for cracking the biosynthetic mechanism of bestatin, but also will provide valuable insight for mining the diverse bioactive compounds based on rational strategies.

Indexed as

Base CompositionBase SequenceComputational BiologyDNA, BacterialGenes, BacterialGenome, BacterialLeucineMultigene FamilyOperonSecondary MetabolismSequence Analysis, DNAStreptomycesDNA, BacterialLeucineubenimex

Identifiers

PMID30706083
OpenAlexW2911801021

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.