Evidence map›Paper›PMID 30705363›Full record

ArticleScientific reports2019

Genetic regulatory mechanisms in human osteoclasts suggest a role for the STMP1 and DCSTAMP genes in Paget's disease of bone.

Benjamin H Mullin, Kun Zhu, Suzanne J Brown, Shelby Mullin, Jennifer Tickner, Nathan J Pavlos, Frank Dudbridge, Jiake Xu, John P Walsh, Scott G Wilson

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  9. Article
  10. Article
  11. Review
  12. Update on the pathogenesis and genetics of Paget's disease of bone.Frontiers in cell and developmental biology · 2022
    Review
  13. Genetic Determinants of Paget's Disease of Bone.Current osteoporosis reports · 2021
    Review
  14. Article
  15. Review
  16. Article
  17. Osteoclast Multinucleation: Review of Current Literature.International journal of molecular sciences · 2020
    Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Benjamin H MullinDepartment of Endocrinology & Diabetes, Sir Charles Gairdner Hospital, Nedlands, WA, Australia. Benjamin.Mullin@uwa.edu.au.
Kun ZhuDepartment of Endocrinology & Diabetes, Sir Charles Gairdner Hospital, Nedlands, WA, Australia.
Suzanne J BrownDepartment of Endocrinology & Diabetes, Sir Charles Gairdner Hospital, Nedlands, WA, Australia.
Shelby MullinDepartment of Endocrinology & Diabetes, Sir Charles Gairdner Hospital, Nedlands, WA, Australia.
Jennifer TicknerSchool of Biomedical Sciences, University of Western Australia, Crawley, WA, Australia.
Nathan J PavlosSchool of Biomedical Sciences, University of Western Australia, Crawley, WA, Australia.
Frank DudbridgeDepartment of Health Sciences, University of Leicester, Leicester, UK.
Jiake XuSchool of Biomedical Sciences, University of Western Australia, Crawley, WA, Australia.
John P WalshDepartment of Endocrinology & Diabetes, Sir Charles Gairdner Hospital, Nedlands, WA, Australia.
Scott G WilsonDepartment of Endocrinology & Diabetes, Sir Charles Gairdner Hospital, Nedlands, WA, Australia.
Sir Charles Gairdner Hospital · AUUniversity of Western Australia · AUUniversity of Leicester · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Paget's disease of bone (PDB) is characterised by focal abnormalities of bone remodelling, with increased osteoclastic resorption the primary feature of the disease. Genetic factors have been shown to play an important role in PDB, and genome-wide association studies (GWAS) have identified 7 genetic loci as associated with PDB at the genome-wide level. Expression quantitative trait locus (eQTL) studies using cell types that are directly relevant to the disease of interest are increasingly being used to identify putative effector genes for GWAS loci. We have recently constructed a unique osteoclast-specific eQTL resource using cells differentiated in vitro from 158 subjects for study of the genetics of bone disease. Considering the major role osteoclasts have in PDB, we used this resource to investigate potential genetic regulatory effects for the 7 PDB genome-wide significant loci on genes located within 500 kb of each locus. After correction for multiple testing, we observed statistically significant associations for rs4294134 with expression of the gene STMP1, and rs2458413 with expression of the genes DPYS and DCSTAMP. The eQTL associations observed for rs4294134 with STMP1, and rs2458413 with DCSTAMP were further supported by eQTL data from other tissue types. The product of the STMP1 gene has not been extensively studied, however the DCSTAMP gene has an established role in osteoclast differentiation and the associations seen between rs2458413 and PDB are likely mediated through regulatory effects on this gene. This study highlights the value of eQTL data in determining which genes are relevant to GWAS loci.

Indexed as

Gene Expression RegulationGenetic Predisposition to DiseaseAdaptor Proteins, Signal TransducingAdultAgedComputational BiologyFemaleGenome-Wide Association StudyHumansMembrane ProteinsMiddle AgedMitochondrial ProteinsOsteitis DeformansOsteoclastsQuantitative Trait LociReproducibility of ResultsAdaptor Proteins, Signal TransducingDCSTAMP protein, humanMembrane ProteinsMitochondrial ProteinsSTMP1 protein, human

Identifiers

PMID30705363
PMCPMC6355970
OpenAlexW2911253994

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.