Evidence map›Paper›PMID 30705275›Full record

ArticleNature communications2019

Marine biofilms constitute a bank of hidden microbial diversity and functional potential.

Weipeng Zhang, Wei Ding, Yong-Xin Li, Chunkit Tam, Salim Bougouffa, Ruojun Wang, Bite Pei, Hoyin Chiang, Pokman Leung, Yanhong Lu and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed, 1 pooled it
13.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 1 synthesis or guideline pooled it, 168 citations in OpenAlex.

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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 5 countries.

Weipeng ZhangDepartment of Ocean Science and Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.
Wei DingDepartment of Ocean Science and Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.
Yong-Xin LiDepartment of Ocean Science and Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.ORCID http://orcid.org/0000-0003-4422-2302
Chunkit TamDepartment of Ocean Science and Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.
Salim BougouffaComputational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia.ORCID http://orcid.org/0000-0001-9218-6452
Ruojun WangDepartment of Ocean Science and Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.
Bite PeiDepartment of Ocean Science and Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.
Hoyin ChiangDepartment of Ocean Science and Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.
Pokman LeungDepartment of Ocean Science and Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.ORCID http://orcid.org/0000-0002-5382-827X
Yanhong LuDepartment of Ocean Science and Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.
Jin SunDepartment of Ocean Science and Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.
He FuDepartment of Marine Sciences, University of Georgia, Athens, 30602, GA, USA.
Vladimir B BajicComputational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia.ORCID http://orcid.org/0000-0001-5435-4750
Hongbin LiuDepartment of Ocean Science and Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.
Nicole S WebsterAustralian Institute of Marine Science, St Lucia, 4067,, QLD, Australia.ORCID http://orcid.org/0000-0002-4753-5278
Pei-Yuan QianDepartment of Ocean Science and Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China. boqianpy@ust.hk.
Hong Kong University of Science and Technology · HKKing Abdullah University of Science and Technology · SAAustralian Institute of Marine Science · AUUniversity of Georgia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent big data analyses have illuminated marine microbial diversity from a global perspective, focusing on planktonic microorganisms. Here, we analyze 2.5 terabases of newly sequenced datasets and the Tara Oceans metagenomes to study the diversity of biofilm-forming marine microorganisms. We identify more than 7,300 biofilm-forming 'species' that are undetected in seawater analyses, increasing the known microbial diversity in the oceans by more than 20%, and provide evidence for differentiation across oceanic niches. Generation of a gene distribution profile reveals a functional core across the biofilms, comprised of genes from a variety of microbial phyla that may play roles in stress responses and microbe-microbe interactions. Analysis of 479 genomes reconstructed from the biofilm metagenomes reveals novel biosynthetic gene clusters and CRISPR-Cas systems. Our data highlight the previously underestimated ocean microbial diversity, and allow mining novel microbial lineages and gene resources.

Indexed as

BiofilmsBiodiversityCRISPR-Cas SystemsMetagenomeSeawater

Identifiers

PMID30705275
PMCPMC6355793
OpenAlexW2915050731

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.