Evidence map›Paper›PMID 30704525›Full record

ArticleHuman genomics2019

A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.

Anna L Guyatt, Rebecca R Brennan, Kimberley Burrows, Philip A I Guthrie, Raimondo Ascione, Susan M Ring, Tom R Gaunt, Angela Pyle, Heather J Cordell, Debbie A Lawlor and 3 more

Open access · goldAbstract read
In one paragraph

Article in Human genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 44 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Anna L GuyattMRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK.
Rebecca R BrennanWellcome Centre for Mitochondrial Research, Newcastle University, Newcastle, UK.
Kimberley BurrowsMRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK.
Philip A I GuthriePopulation Health Sciences, Bristol Medical School, University of Bristol, Bristol, UK.
Raimondo AscioneBristol Heart Institute, Translational Health Sciences, Bristol Medical School, University of Bristol, Bristol, UK.
Susan M RingMRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK.
Tom R GauntMRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK.
Angela PyleWellcome Centre for Mitochondrial Research, Newcastle University, Newcastle, UK.
Heather J CordellInstitute of Genetic Medicine, Newcastle University, Newcastle, UK.
Debbie A LawlorMRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK.
Patrick F ChinneryDepartment of Clinical Neurosciences and MRC Mitochondrial Biology Unit, University of Cambridge, Cambridge, UK.
Gavin HudsonWellcome Centre for Mitochondrial Research, Newcastle University, Newcastle, UK.
Santiago RodriguezMRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK. santi.rodriguez@bristol.ac.uk.
University of Bristol · GBMRC Epidemiology Unit · GBNewcastle University · GBWellcome Centre for Mitochondrial Research · GBMRC Mitochondrial Biology Unit · GB

Funding

British Heart Foundation SP/07/008/24066Medical Research Council G0601943Medical Research Council G1001357Medical Research Council G9815508Medical Research Council MC_PC_15018Medical Research Council MC_UP_1501/2Medical Research Council MC_UU_00011/4Medical Research Council MC_UU_00015/7Medical Research Council MC_UU_00015/8Medical Research Council MC_UU_00015/9Medical Research Council MC_UU_12013/5Medical Research Council MC_UU_12013/8Medical Research Council MR/K000608/1Medical Research Council MR/K002767/1Wellcome Trust 096919/Z/11/ZWellcome Trust 101876/Z/13/ZWellcome Trust 102215/2/13/2Wellcome Trust 102433/Z/13/ZWellcome Trust 212219/Z/18/ZWellcome Trust WT088806Wellcome Trust WT092830M
6 · The paper itself

Abstract

backgroundMitochondrial DNA copy number (mtDNA CN) exhibits interindividual and intercellular variation, but few genome-wide association studies (GWAS) of directly assayed mtDNA CN exist. We undertook a GWAS of qPCR-assayed mtDNA CN in the Avon Longitudinal Study of Parents and Children (ALSPAC) and the UK Blood Service (UKBS) cohort. After validating and harmonising data, 5461 ALSPAC mothers (16-43 years at mtDNA CN assay) and 1338 UKBS females (17-69 years) were included in a meta-analysis. Sensitivity analyses restricted to females with white cell-extracted DNA and adjusted for estimated or assayed cell proportions. Associations were also explored in ALSPAC children and UKBS males.

resultsA neutrophil-associated locus approached genome-wide significance (rs709591 [MED24], β (change in SD units of mtDNA CN per allele) [SE] - 0.084 [0.016], p = 1.54e-07) in the main meta-analysis of adult females. This association was concordant in magnitude and direction in UKBS males and ALSPAC neonates. SNPs in and around ABHD8 were associated with mtDNA CN in ALSPAC neonates (rs10424198, β [SE] 0.262 [0.034], p = 1.40e-14), but not other study groups. In a meta-analysis of unrelated individuals (N = 11,253), we replicated a published association in TFAM (β [SE] 0.046 [0.017], p = 0.006), with an effect size much smaller than that observed in the replication analysis of a previous in silico GWAS.

conclusionsIn a hypothesis-generating GWAS, we confirm an association between TFAM and mtDNA CN and present putative loci requiring replication in much larger samples. We discuss the limitations of our work, in terms of measurement error and cellular heterogeneity, and highlight the need for larger studies to better understand nuclear genomic control of mtDNA copy number.

Indexed as

DNA Copy Number VariationsAdolescentAdultChildCohort StudiesDNA, MitochondrialFemaleGenome-Wide Association StudyHumansInfant, NewbornMaleMiddle AgedPolymorphism, Single NucleotideDNA, MitochondrialALSPACComplex traitsGenetic epidemiologyGenome-wide association studyMitochondrial DNA

Identifiers

PMID30704525
PMCPMC6357493
OpenAlexW2883608142

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.