Evidence map›Paper›PMID 30704500›Full record

ArticleGenome biology2019

Gene editing of the multi-copy H2A.B gene and its importance for fertility.

Nur Diana Anuar, Sebastian Kurscheid, Matt Field, Lei Zhang, Edward Rebar, Philip Gregory, Thierry Buchou, Josephine Bowles, Peter Koopman, David J Tremethick and 1 more

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. TheBiomolecules · 2025
    Review
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  8. Article
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  12. ThroughoutFrontiers in endocrinology · 2023
    Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Histone variants at a glance.Journal of cell science · 2021
    Review
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Nur Diana AnuarThe John Curtin School of Medical Research, The Australian National University, Canberra, ACT, 2601, Australia.
Sebastian KurscheidThe John Curtin School of Medical Research, The Australian National University, Canberra, ACT, 2601, Australia.
Matt FieldThe John Curtin School of Medical Research, The Australian National University, Canberra, ACT, 2601, Australia.
Lei ZhangSangamo Therapeutics, 501 Canal Blvd, Richmond, CA, 94804, USA.
Edward RebarSangamo Therapeutics, 501 Canal Blvd, Richmond, CA, 94804, USA.
Philip GregorySangamo Therapeutics, 501 Canal Blvd, Richmond, CA, 94804, USA.
Thierry BuchouCNRS UMR 5309, Inserm U1209, Universite' Grenoble Alpes, Institute for Advanced Biosciences, 38700, Grenoble, France.
Josephine BowlesInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.
Peter KoopmanInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.
David J TremethickThe John Curtin School of Medical Research, The Australian National University, Canberra, ACT, 2601, Australia. David.Tremethick@anu.edu.au.
Tatiana A SobolevaThe John Curtin School of Medical Research, The Australian National University, Canberra, ACT, 2601, Australia. Tanya.Soboleva@anu.edu.au.
Australian National University · AUUniversity of Queensland · AUSangamo BioSciences (United States) · USBluebird Bio (United States) · USInserm · FRJames Cook University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAltering the biochemical makeup of chromatin by the incorporation of histone variants during development represents a key mechanism in regulating gene expression. The histone variant H2A.B, H2A.B.3 in mice, appeared late in evolution and is most highly expressed in the testis. In the mouse, it is encoded by three different genes. H2A.B expression is spatially and temporally regulated during spermatogenesis being most highly expressed in the haploid round spermatid stage. Active genes gain H2A.B where it directly interacts with polymerase II and RNA processing factors within splicing speckles. However, the importance of H2A.B for gene expression and fertility are unknown.

resultsHere, we report the first mouse knockout of this histone variant and its effects on fertility, nuclear organization, and gene expression. In view of the controversy related to the generation of off-target mutations by gene editing approaches, we test the specificity of TALENs by disrupting the H2A.B multi-copy gene family using only one pair of TALENs. We show that TALENs do display a high level of specificity since no off-target mutations are detected by bioinformatics analyses of exome sequences obtained from three consecutive generations of knockout mice and by Sanger DNA sequencing. Male H2A.B.3 knockout mice are subfertile and display an increase in the proportion of abnormal sperm and clogged seminiferous tubules. Significantly, a loss of proper RNA Pol II targeting to distinct transcription-splicing territories and changes to pre-mRNA splicing are observed.

conclusionWe have produced the first H2A.B knockout mouse using the TALEN approach.

Indexed as

Transcription Activator-Like Effector NucleasesAnimalsBase SequenceChromosomal Proteins, Non-HistoneFemaleFertilityGene EditingGene ExpressionHistonesInfertility, MaleMaleMice, KnockoutMutationRNA Polymerase IISpermatozoaChromosomal Proteins, Non-HistoneHistonesRNA Polymerase IIspermatid transition proteinsTranscription Activator-Like Effector NucleasesChromatinGenome editingH2A.BHistone variantsPre-mRNA splicingRNA polymerase IISplicing specklesTALENs

Identifiers

PMID30704500
PMCPMC6357441
OpenAlexW2914988763

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.