Evidence map›Paper›PMID 30704096›Full record

ArticleMolecules (Basel, Switzerland)2019

Getting the Most Out of Your Crystals: Data Collection at the New High-Flux, Microfocus MX Beamlines at NSLS-II.

Michelle S Miller, Sweta Maheshwari, Wuxian Shi, Yuan Gao, Nam Chu, Alexei S Soares, Philip A Cole, L Mario Amzel, Martin R Fuchs, Jean Jakoncic and 1 more

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Michelle S MillerDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. michelle.miller@jhmi.edu.
Sweta MaheshwariDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. sweta@jhmi.edu.
Wuxian ShiEnergy & Photon Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA. wushi@bnl.gov.
Yuan GaoEnergy & Photon Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA. yuangao@bnl.gov.ORCID 0000-0002-5435-8863
Nam ChuDivision of Genetics, Departments of Medicine and Biological Chemistry and Molecular Pharmacology, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115, USA. nchu3@bwh.harvard.edu.
Alexei S SoaresEnergy & Photon Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA. soares@bnl.gov.ORCID 0000-0002-6565-8503
Philip A ColeDivision of Genetics, Departments of Medicine and Biological Chemistry and Molecular Pharmacology, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115, USA. pacole@bwh.harvard.edu.
L Mario AmzelDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. mamzel@jhmi.edu.
Martin R FuchsEnergy & Photon Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA. mfuchs@bnl.gov.ORCID 0000-0001-9784-0927
Jean JakoncicEnergy & Photon Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA. jjakoncic@bnl.gov.
Sandra B GabelliDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. gabelli@jhmi.edu.ORCID 0000-0003-1205-5204

Funding

Tumor Antigens for Individual Signatures and TherapyP50CA062924 · NCI · JOHNS HOPKINS UNIVERSITY · PI KERN, SCOTT E · 1993 to 2022
$54.6M
X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Chemical Approaches to Protein PhosphorylationR01CA074305 · NCI · JOHNS HOPKINS UNIVERSITY · PI COLE, PHILIP A · 2002 to 2025
$8.0M
ENZYMATIC STUDIES ON PROTEIN TYROSINE KINASE CSKR29CA074305 · NCI · ROCKEFELLER UNIVERSITY · PI COLE, PHILIP A · 1997 to 2001
$188k
National Science Foundation MCB-1517522NCI NIH HHS CA062924NCI NIH HHS CA74305NCI NIH HHS P50 CA062924NCI NIH HHS R01 CA074305NIBIB NIH HHS P30 EB009998NIGMS NIH HHS P30 GM133893NIGMS NIH HHS P41 GM111244NIGMS NIH HHS P41GM111244U.S. Department of Defense CDMRP BC151831U.S. Department of Energy KC0401040U.S. Department of Energy KP1605010
6 · The paper itself

Abstract

Advances in synchrotron technology are changing the landscape of macromolecular crystallography. The two recently opened beamlines at NSLS-II-AMX and FMX-deliver high-flux microfocus beams that open new possibilities for crystallographic data collection. They are equipped with state-of-the-art experimental stations and automation to allow data collection on previously intractable crystals. Optimized data collection strategies allow users to tailor crystal positioning to optimally distribute the X-ray dose over its volume. Vector data collection allows the user to define a linear trajectory along a well diffracting volume of the crystal and perform rotational data collection while moving along the vector. This is particularly well suited to long, thin crystals. We describe vector data collection of three proteins-Akt1, PI3Kα, and CDP-Chase-to demonstrate its application and utility. For smaller crystals, we describe two methods for multicrystal data collection in a single loop, either manually selecting multiple centers (using H108A-PHM as an example), or "raster-collect", a more automated approach for a larger number of crystals (using CDP-Chase as an example).

Indexed as

Crystallography, X-RayModels, MolecularPhosphatidylinositol 3-KinasesProtein ConformationProteinsPyrophosphatasesPhosphatidylinositol 3-KinasesProteinsPyrophosphatasesCDP-Chasemicrodiffractionmicrofocusmulticrystalnonhomogeneous crystalsNSLS-IIPHMPI3Kα, Akt1vector data collection

Identifiers

PMID30704096
PMCPMC6384729

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.