Evidence map›Paper›PMID 30701989›Full record

ArticleBiological research for nursing2019

A Pilot Study Using a Multistaged Integrated Analysis of Gene Expression and Methylation to Evaluate Mechanisms for Evening Fatigue in Women Who Received Chemotherapy for Breast Cancer.

Elena Flowers, Annesa Flentje, Jon Levine, Adam Olshen, Marilyn Hammer, Steven Paul, Yvette Conley, Christine Miaskowski, Kord M Kober

Abstract read
In one paragraph

Article in Biological research for nursing, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Elena Flowers1 School of Nursing, University of California, San Francisco, San Francisco, CA, USA.
Annesa Flentje1 School of Nursing, University of California, San Francisco, San Francisco, CA, USA.
Jon Levine2 School of Medicine, University of California, San Francisco, San Francisco, CA, USA.
Adam Olshen2 School of Medicine, University of California, San Francisco, San Francisco, CA, USA.
Marilyn Hammer3 Department of Nursing, Mount Sinai Hospital, New York, NY, USA.
Steven Paul1 School of Nursing, University of California, San Francisco, San Francisco, CA, USA.
Yvette Conley4 School of Nursing, University of Pittsburg, Pittsburg, PA, USA.
Christine Miaskowski1 School of Nursing, University of California, San Francisco, San Francisco, CA, USA.
Kord M Kober1 School of Nursing, University of California, San Francisco, San Francisco, CA, USA.
University of California, San Francisco · USMount Sinai Hospital · USPittsburg State University · US

Funding

Clinical and Transtional Science InstituteKL2TR000143 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRANDIS, JENNIFER RUBIN · 2012 to 2015
$11.9M
Symptoms Clusters in Oncology Patients Receiving ChemotherapyR01CA134900 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AOUIZERAT, BRADLEY E, MIASKOWSKI, CHRISTINE A. · 2009 to 2014
$5.9M
Gene expression outcomes in interventions for substance using HIV+ minority menK23DA039800 · NIDA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FLENTJE, ANNESA · 2015 to 2019
$1.0M
Advancing the Science of Symptom Management in Oncology PatientsK05CA168960 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MIASKOWSKI, CHRISTINE A. · 2013 to 2017
$453k
NCATS NIH HHS KL2 TR000143NCI NIH HHS K05 CA168960NCI NIH HHS R01 CA134900NIDA NIH HHS K23 DA039800
6 · The paper itself

Abstract

contextFatigue is the most common symptom associated with cancer and its treatment. Investigation of molecular mechanisms associated with fatigue may identify new therapeutic targets.

objectiveThe objective of this pilot study was to evaluate the relationships between gene expression and methylation status and evening fatigue severity in women with breast cancer who received chemotherapy.

methodsLatent class analysis (LCA) was used to identify evening fatigue phenotypes. In this analysis, the lowest (i.e., moderate, n = 7) and highest (i.e., very high, n = 29) fatigue-severity classes identified using LCA were analyzed via two stages. First, a total of 32,609 transcripts from whole blood were evaluated for differences in expression levels between the classes. Next, 637 methylation sites located within the putative transcription factor binding sites for those genes demonstrating differential expression were evaluated for differential methylation state between the classes.

resultsA total of 89 transcripts in 75 unique genes were differentially expressed between the moderate (the lowest fatigue-severity class identified) and very high evening fatigue classes. In addition, 23 differentially methylated probes and three differentially methylated regions were found between the moderate and very high evening fatigue classes.

conclusionsUsing a multistaged integrated analysis of gene expression and methylation, differential methylation was identified in the regulatory regions of genes associated with previously hypothesized mechanisms for fatigue, including inflammation, immune function, neurotransmission, circadian rhythm, skeletal muscle energy, carbohydrate metabolism, and renal function as well as core biological processes including gene transcription and the cell-cycle regulation.

Indexed as

AdultAgedAntineoplastic AgentsBreast NeoplasmsCircadian RhythmDNA MethylationFatigueFemaleGene ExpressionHumansMiddle AgedPhenotypePilot ProjectsAntineoplastic Agentsbreast cancerchemotherapyfatiguegene expressionintegrated genomic analysismethylation

Identifiers

PMID30701989
PMCPMC6700896
OpenAlexW2912302328

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.