Evidence map›Paper›PMID 30700785›Full record

ArticleScientific reports2019

The EZH2 SANT1 domain is a histone reader providing sensitivity to the modification state of the H4 tail.

Tyler M Weaver, Jiachen Liu, Katelyn E Connelly, Chris Coble, Katayoun Varzavand, Emily C Dykhuizen, Catherine A Musselman

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  5. Genes & development · 2024
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  10. Review
  11. Review
  12. Review
  13. Article
  14. A partially disordered region connects gene repression and activation functions of EZH2.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Review
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Tyler M WeaverDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, IA, 52242, USA.
Jiachen LiuDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, IA, 52242, USA.
Katelyn E ConnellyDepartment of Medicinal Chemistry and Molecular Pharmacology, College of Pharmacy, Purdue University, West Lafayette, IN, 47907, USA.
Chris CobleDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, IA, 52242, USA.
Katayoun VarzavandDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, IA, 52242, USA.
Emily C DykhuizenDepartment of Medicinal Chemistry and Molecular Pharmacology, College of Pharmacy, Purdue University, West Lafayette, IN, 47907, USA.
Catherine A MusselmanDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, IA, 52242, USA. catherine-musselman@uiowa.edu.ORCID 0000-0002-8356-7971
University of Iowa · USPurdue University West Lafayette · US

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
Molecular mechanisms of histone signaling in a chromatin relevant contextR35GM128705 · NIGMS · UNIVERSITY OF IOWA · PI Catherine Anne Musselman · 2018 to 2026
$3.8M
The tumor suppressive role of PBRM1, the bromodomain-containing subunit of the PBAF chromatin remodeling complexU01CA207532 · NCI · PURDUE UNIVERSITY · PI DYKHUIZEN, EMILY CARLA · 2017 to 2021
$1.7M
NCI NIH HHS U01 CA207532NIGMS NIH HHS R35 GM128705U.S. Department of Health & Human Services | National Institutes of Health (NIH) UL1TR00108
6 · The paper itself

Abstract

SANT domains are found in a number of chromatin regulators. They contain approximately 50 amino acids and have high similarity to the DNA binding domain of Myb related proteins. Though some SANT domains associate with DNA others have been found to bind unmodified histone tails. There are two SANT domains in Enhancer of Zeste 2 (EZH2), the catalytic subunit of the Polycomb Repressive Complex 2 (PRC2), of unknown function. Here we show that the first SANT domain (SANT1) of EZH2 is a histone binding domain with specificity for the histone H4 N-terminal tail. Using NMR spectroscopy, mutagenesis, and molecular modeling we structurally characterize the SANT1 domain and determine the molecular mechanism of binding to the H4 tail. Though not important for histone binding, we find that the adjacent stimulation response motif (SRM) stabilizes SANT1 and transiently samples its active form in solution. Acetylation of H4K16 (H4K16ac) or acetylation or methylation of H4K20 (H4K20ac and H4K20me3) are seen to abrogate binding of SANT1 to H4, which is consistent with these modifications being anti-correlated with H3K27me3 in-vivo. Our results provide significant insight into this important regulatory region of EZH2 and the first characterization of the molecular mechanism of SANT domain histone binding.

Indexed as

Protein Processing, Post-TranslationalEnhancer of Zeste Homolog 2 ProteinHistonesHumansProtein DomainsStructure-Activity RelationshipEnhancer of Zeste Homolog 2 ProteinHistones

Identifiers

PMID30700785
PMCPMC6353875
OpenAlexW2914762525

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.