Evidence map›Paper›PMID 30700756›Full record

ArticleScientific reports2019

RNA-Seq transcriptome analysis shows anti-tumor actions of melatonin in a breast cancer xenograft model.

Bruna Victorasso Jardim-Perassi, Pâmela A Alexandre, Nathalia M Sonehara, Rubens de Paula-Junior, Osvaldo Reis Júnior, Heidge Fukumasu, Roger Chammas, Luiz Lehmann Coutinho, Debora Aparecida Pires de Campos Zuccari

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Bruna Victorasso Jardim-PerassiFaculdade de Medicina de São José do Rio Preto, Av. Brigadeiro Faria Lima, 5419, São José do Rio Preto, SP, 15090-000, Brazil.
Pâmela A AlexandreUniversidade de São Paulo, Faculdade de Zootecnia e Engenharia de Alimentos, Av. Duque de Caxias Norte, 225 - Zona Rural, Pirassununga, SP, 13635-900, Brazil.ORCID 0000-0002-0649-7033
Nathalia M SoneharaFaculdade de Medicina de São José do Rio Preto, Av. Brigadeiro Faria Lima, 5419, São José do Rio Preto, SP, 15090-000, Brazil.
Rubens de Paula-JuniorFaculdade de Medicina de São José do Rio Preto, Av. Brigadeiro Faria Lima, 5419, São José do Rio Preto, SP, 15090-000, Brazil.
Osvaldo Reis JúniorUniversidade Estadual de Campinas, Instituto de Biologia, Cidade Universitária Zeferino Vaz - Barão Geraldo, Campinas, SP, 13083-970, Brazil.
Heidge FukumasuUniversidade de São Paulo, Faculdade de Zootecnia e Engenharia de Alimentos, Av. Duque de Caxias Norte, 225 - Zona Rural, Pirassununga, SP, 13635-900, Brazil.ORCID 0000-0002-3265-5090
Roger ChammasFaculdade de Medicina da Universidade de São Paulo, Av. Dr. Arnaldo, 251 8th floor, São Paulo, SP, 01246-000, Brazil.ORCID 0000-0003-0342-8726
Luiz Lehmann CoutinhoEscola Superior de Agricultura Luiz de Queiroz, Av. Pádua Dias, 11 - Agronomia, Piracicaba, SP, 13418-900, Brazil.ORCID 0000-0002-7266-8881
Debora Aparecida Pires de Campos ZuccariFaculdade de Medicina de São José do Rio Preto, Av. Brigadeiro Faria Lima, 5419, São José do Rio Preto, SP, 15090-000, Brazil. debora.zuccari@famerp.br.
Faculdade de Medicina de São José do Rio Preto · BRUniversidade de São Paulo · BRAgroBio · BRHospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo · BRUniversidade Estadual de Campinas (UNICAMP) · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Melatonin is a pleiotropic anti-cancer molecule that controls cancer growth by multiple mechanisms. RNA-Seq can potentially evaluate therapeutic response and its use in xenograft tumor models can differentiate the changes that occur specifically in tumor cells or in the tumor microenvironment (TME). Melatonin actions were evaluated in a xenograft model of triple-negative breast cancer. Balb/c nude mice bearing MDA-MB-231 tumors were treated with melatonin or vehicle. RNA-Seq was performed on the Illumina HiSeq. 2500 and data were mapped against human and mouse genomes separately to differentiate species-specific expression. Differentially expressed (DE) genes were identified and Weighted Gene Co-expression Network Analysis (WGCNA) was used to detect clusters of highly co-expressed genes. Melatonin treatment reduced tumor growth (p < 0.01). 57 DE genes were identified in murine cells, which represented the TME, and were mainly involved in immune response. The WGCNA detected co-expressed genes in tumor cells and TME, which were related to the immune system among other biological processes. The upregulation of two genes (Tnfaip8l2 and Il1f6) by melatonin was validated in the TME, these genes play important roles in the immune system. Taken together, the transcriptomic data suggests that melatonin anti-tumor actions occur through modulation of TME in this xenograft tumor model.

Indexed as

Gene Expression ProfilingRNA-SeqXenograft Model Antitumor AssaysAnimalsBreast NeoplasmsCaspase 3Cell Line, TumorCell ProliferationFemaleGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansMelatoninMiceReproducibility of ResultsTumor MicroenvironmentCaspase 3Melatonin

Identifiers

PMID30700756
PMCPMC6353949
OpenAlexW2917468338

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.