Evidence map›Paper›PMID 30699347›Full record

ArticleCell reports2019

Enhancer Histone Acetylation Modulates Transcriptional Bursting Dynamics of Neuronal Activity-Inducible Genes.

Liang-Fu Chen, Yen Ting Lin, David A Gallegos, Mariah F Hazlett, Mariana Gómez-Schiavon, Marty G Yang, Breanna Kalmeta, Allen S Zhou, Liad Holtzman, Charles A Gersbach and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 176 citations in OpenAlex.

  1. Article
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  4. Epigenetic editing: from concept to clinic.Nature reviews. Drug discovery · 2026
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  6. What makes genes burst.Trends in cell biology · 2026
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  13. Structural basis of the catalytic and allosteric mechanism of bacterial acetyltransferase PatZ.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Review
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  20. Review

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Liang-Fu ChenDepartment of Neurobiology, Duke University, Durham, NC 27710, USA.
Yen Ting LinCenter for Nonlinear Studies (T-CNLS) and Theoretical Biology and Biophysics Group (T-6), Theoretical Division, Los Alamos National Laboratory, NM 87545, USA.
David A GallegosDepartment of Neurobiology, Duke University, Durham, NC 27710, USA.
Mariah F HazlettDepartment of Neurobiology, Duke University, Durham, NC 27710, USA.
Mariana Gómez-SchiavonProgram in Computational Biology and Bioinformatics, Duke University, Durham, NC 27710, USA; Center for Genomic and Computational Biology, Duke University, Durham, NC 27710, USA; Department of Biology, Duke University, Durham, NC 27710, USA.
Marty G YangDepartment of Neurobiology, Duke University, Durham, NC 27710, USA.
Breanna KalmetaDepartment of Neurobiology, Duke University, Durham, NC 27710, USA.
Allen S ZhouDepartment of Neurobiology, Duke University, Durham, NC 27710, USA.
Liad HoltzmanCenter for Genomic and Computational Biology, Duke University, Durham, NC 27710, USA; Department of Biomedical Engineering, Duke University, Durham, NC 27710, USA.
Charles A GersbachCenter for Genomic and Computational Biology, Duke University, Durham, NC 27710, USA; Department of Biomedical Engineering, Duke University, Durham, NC 27710, USA; Department of Orthopaedic Surgery, Duke University, Durham, NC 27710, USA.
Jörg GrandlDepartment of Neurobiology, Duke University, Durham, NC 27710, USA.
Nicolas E BuchlerCenter for Genomic and Computational Biology, Duke University, Durham, NC 27710, USA; Department of Biology, Duke University, Durham, NC 27710, USA; Department of Molecular Biomedical Sciences, North Carolina State University, Raleigh, NC 27606, USA. Electronic address: nebuchle@ncsu.edu.
Anne E WestDepartment of Neurobiology, Duke University, Durham, NC 27710, USA. Electronic address: west@neuro.duke.edu.
Duke University · USLos Alamos National Laboratory · US

Funding

Engineering Targeted Epigenetic Modifiers for Precise Control of Gene RegulationR01DA036865 · NIDA · DUKE UNIVERSITY · PI CRAWFORD, GREGORY E, GERSBACH, CHARLES A. · 2013 to 2017
$2.6M
Rewiring the yeast brain: Redundancy and interference in genetic networksDP2OD008654 · OD · DUKE UNIVERSITY · PI BUCHLER, NICOLAS EMILE · 2011 to 2011
$2.4M
In Vivo Epigenome Editing with CRISPR-Based Histone Acetyltransferase TransgenicR33DA041878 · NIDA · DUKE UNIVERSITY · PI GERSBACH, CHARLES A., WEST, ANNE ELIZABETH · 2018 to 2020
$1.1M
In Vivo Epigenome Editing with CRISPR-Based Histone Acetyltransferase Transgenic MiceR21DA041878 · NIDA · DUKE UNIVERSITY · PI GERSBACH, CHARLES A., WEST, ANNE ELIZABETH · 2016 to 2017
$392k
NIDA NIH HHS R01 DA036865NIDA NIH HHS R21 DA041878NIDA NIH HHS R33 DA041878NIH HHS DP2 OD008654
6 · The paper itself

Abstract

Neuronal activity-inducible gene transcription correlates with rapid and transient increases in histone acetylation at promoters and enhancers of activity-regulated genes. Exactly how histone acetylation modulates transcription of these genes has remained unknown. We used single-cell in situ transcriptional analysis to show that Fos and Npas4 are transcribed in stochastic bursts in mouse neurons and that membrane depolarization increases mRNA expression by increasing burst frequency. We then expressed dCas9-p300 or dCas9-HDAC8 fusion proteins to mimic or block activity-induced histone acetylation locally at enhancers. Adding histone acetylation increased Fos transcription by prolonging burst duration and resulted in higher Fos protein levels and an elevation of resting membrane potential. Inhibiting histone acetylation reduced Fos transcription by reducing burst frequency and impaired experience-dependent Fos protein induction in the hippocampus in vivo. Thus, activity-inducible histone acetylation tunes the transcriptional dynamics of experience-regulated genes to affect selective changes in neuronal gene expression and cellular function.

Indexed as

Gene Expression RegulationTranscription, GeneticAcetylationAction PotentialsAllelesAnimalsBasic Helix-Loop-Helix ProteinsBromodomain Containing ProteinsCell MembraneCRISPR-Associated Protein 9CRISPR-Cas SystemsEnhancer Elements, GeneticHistonesMiceNeuronsNuclear ProteinsBasic Helix-Loop-Helix ProteinsBrd4 protein, mouseBromodomain Containing ProteinsCRISPR-Associated Protein 9HistonesNpas4 protein, mouseNuclear ProteinsProto-Oncogene Proteins c-fosRNA, MessengerTranscription FactorsCRISPRenhancerepigenome editinghistone acetylationneuronal activity-inducible transcriptiontranscriptional bursting

Identifiers

PMID30699347
PMCPMC6376993
OpenAlexW2912185173

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.