Evidence map›Paper›PMID 30698750›Full record

ArticleNucleic acids research2019

Conditional degradation of SDE2 by the Arg/N-End rule pathway regulates stress response at replication forks.

Julie Rageul, Jennifer J Park, Ukhyun Jo, Alexandra S Weinheimer, Tri T M Vu, Hyungjin Kim

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Signaling Pathways Regulated by UBR Box-Containing E3 Ligases.International journal of molecular sciences · 2021
    Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Downregulation of the Arg/N-degron Pathway Sensitizes Cancer Cells to Chemotherapy In Vivo.Molecular therapy : the journal of the American Society of Gene Therapy · 2020
    Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Julie RageulDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794, USA.
Jennifer J ParkDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794, USA.
Ukhyun JoDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794, USA.
Alexandra S WeinheimerBiochemistry and Structural Biology graduate program, Stony Brook University, Stony Brook, NY 11794, USA.
Tri T M VuDivision of Biology, California Institute of Technology, Pasadena, CA 91125, USA.
Hyungjin KimDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794, USA.
Stony Brook University · USCalifornia Institute of Technology · USStony Brook School · US

Funding

Proteolytic control of DNA interstrand cross-link repair and genome integrityR01CA218132 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI KIM, HYUNGJIN · 2018 to 2022
$1.8M
NCI NIH HHS R01 CA218132
6 · The paper itself

Abstract

Multiple pathways counteract DNA replication stress to prevent genomic instability and tumorigenesis. The recently identified human SDE2 is a genome surveillance protein regulated by PCNA, a DNA clamp and processivity factor at replication forks. Here, we show that SDE2 cleavage after its ubiquitin-like domain generates Lys-SDE2Ct, the C-terminal SDE2 fragment bearing an N-terminal Lys residue. Lys-SDE2Ct constitutes a short-lived physiological substrate of the Arg/N-end rule proteolytic pathway, in which UBR1 and UBR2 ubiquitin ligases mediate the degradation. The Arg/N-end rule and VCP/p97UFD1-NPL4 segregase cooperate to promote phosphorylation-dependent, chromatin-associated Lys-SDE2Ct degradation upon UVC damage. Conversely, cells expressing the degradation-refractory K78V mutant, Val-SDE2Ct, fail to induce RPA phosphorylation and single-stranded DNA formation, leading to defects in PCNA-dependent DNA damage bypass and stalled fork recovery. Together, our study elucidates a previously unappreciated axis connecting the Arg/N-end rule and the p97-mediated proteolysis with the replication stress response, working together to preserve replication fork integrity.

Indexed as

GenomeAnimalsCell Line, TumorChromatinDNADNA-Binding ProteinsDNA ReplicationGene Expression RegulationHEK293 CellsHeLa CellsHumansMiceMouse Embryonic Stem CellsOsteoblastsPhosphorylationProliferating Cell Nuclear AntigenChromatinDNADNA-Binding ProteinsPCNA protein, humanProliferating Cell Nuclear AntigenReplication Protein ARPA1 protein, humanSDE2 protein, humanUbiquitin-Protein LigasesUBR1 protein, humanUBR2 protein, humanValosin Containing ProteinVCP protein, human

Identifiers

PMID30698750
PMCPMC6486553
OpenAlexW2911329081

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.