Evidence map›Paper›PMID 30698748›Full record

ArticleNucleic acids research2019

SMCHD1 is involved in de novo methylation of the DUX4-encoding D4Z4 macrosatellite.

Camille Dion, Stéphane Roche, Camille Laberthonnière, Natacha Broucqsault, Virginie Mariot, Shifeng Xue, Alexandra D Gurzau, Agnieszka Nowak, Christopher T Gordon, Marie-Cécile Gaillard and 21 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 58 citations in OpenAlex.

  1. Review
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  6. Exit from totipotency in mammals: an epigenetic perspective.Frontiers in cell and developmental biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 8 institutions in 7 countries.

Camille DionAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Stéphane RocheAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Camille LaberthonnièreAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Natacha BroucqsaultAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Virginie MariotNIHR Biomedical Research Centre, University College London, Great Ormond Street Institute of Child Health and Great Ormond Street Hospital NHS Trust, 30 Guilford Street, London WC1N 1EH, UK.
Shifeng XueInstitute of Molecular and Cell Biology, A*STAR, Singapore. Institute of Medical Biology, A*STAR, Singapore.
Alexandra D GurzauThe Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia; The Department of Medical Biology, University of Melbourne, Melbourne, Australia.
Agnieszka NowakInstitut de Génétique Humaine UMR9002 CNRS-Université de Montpellier. France.
Christopher T GordonLaboratory of Embryology and Genetics of Human Malformation, INSERM UMR 1163, Institut Imagine, Paris, France.
Marie-Cécile GaillardAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Claire El-YazidiAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Morgane ThomasAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Andrée Schlupp-RobagliaAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Chantal MissirianAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Valérie MalanLaboratory of Embryology and Genetics of Human Malformation, INSERM UMR 1163, Institut Imagine, Paris, France.
Liham RatbiCentre de Génomique Humaine et Genopath, Faculté de Médecine et de Pharmacie, Université Mohammed V, 10100 Rabat, Morocco.
Abdelaziz SefianiCentre de Génomique Humaine et Genopath, Faculté de Médecine et de Pharmacie, Université Mohammed V, 10100 Rabat, Morocco.
Bernd WollnikInstitute of Human Genetics, University Medical Campus Göttingen, 37073 Göttingen, Germany.
Bernard BinetruyAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Emmanuelle Salort CampanaAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Shahram AttarianAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Rafaelle BernardAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Karine NguyenAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Jeanne AmielLaboratory of Embryology and Genetics of Human Malformation, INSERM UMR 1163, Institut Imagine, Paris, France.
Julie DumonceauxNIHR Biomedical Research Centre, University College London, Great Ormond Street Institute of Child Health and Great Ormond Street Hospital NHS Trust, 30 Guilford Street, London WC1N 1EH, UK.
James M MurphyThe Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia; The Department of Medical Biology, University of Melbourne, Melbourne, Australia.
Jérôme DéjardinInstitut de Génétique Humaine UMR9002 CNRS-Université de Montpellier. France.
Marnie E BlewittThe Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia; The Department of Medical Biology, University of Melbourne, Melbourne, Australia.
Bruno ReversadeInstitute of Molecular and Cell Biology, A*STAR, Singapore. Institute of Medical Biology, A*STAR, Singapore.
Jérôme D RobinAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Frédérique MagdinierAix Marseille Univ, INSERM MMG, Nerve and Muscle Department, Marseille, France.
Inserm · FRThe University of Melbourne · AUAgency for Science, Technology and Research · SGCentre National de la Recherche Scientifique · FRDélégation Paris 5 · FRGreat Ormond Street Hospital · GBMohammed V University · MAHôpital Necker-Enfants Malades · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The DNA methylation epigenetic signature is a key determinant during development. Rules governing its establishment and maintenance remain elusive especially at repetitive sequences, which account for the majority of methylated CGs. DNA methylation is altered in a number of diseases including those linked to mutations in factors that modify chromatin. Among them, SMCHD1 (Structural Maintenance of Chromosomes Hinge Domain Containing 1) has been of major interest following identification of germline mutations in Facio-Scapulo-Humeral Dystrophy (FSHD) and in an unrelated developmental disorder, Bosma Arhinia Microphthalmia Syndrome (BAMS). By investigating why germline SMCHD1 mutations lead to these two different diseases, we uncovered a role for this factor in de novo methylation at the pluripotent stage. SMCHD1 is required for the dynamic methylation of the D4Z4 macrosatellite upon reprogramming but seems dispensable for methylation maintenance. We find that FSHD and BAMS patient's cells carrying SMCHD1 mutations are both permissive for DUX4 expression, a transcription factor whose regulation has been proposed as the main trigger for FSHD. These findings open new questions as to what is the true aetiology for FSHD, the epigenetic events associated with the disease thus calling the current model into question and opening new perspectives for understanding repetitive DNA sequences regulation.

Indexed as

DNA MethylationCells, CulturedCellular ReprogrammingChoanal AtresiaChromosomal Proteins, Non-HistoneEpigenesis, GeneticGene Expression RegulationHCT116 CellsHEK293 CellsHomeodomain ProteinsHumansMaleMicrophthalmosMicrosatellite RepeatsMuscular Dystrophy, FacioscapulohumeralNoseChromosomal Proteins, Non-HistoneDUX4L1 protein, humanHomeodomain ProteinsSMCHD1 protein, human

Identifiers

PMID30698748
PMCPMC6451109
OpenAlexW2914518842

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.