Evidence map›Paper›PMID 30698415›Full record

ArticleBiochemistry2019

Interrogation of Eukaryotic Stop Codon Readthrough Signals by in Vitro RNA Selection.

Andrew V Anzalone, Sakellarios Zairis, Annie J Lin, Raul Rabadan, Virginia W Cornish

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Regulatory landscape of widespread stop codon readthrough inbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Ribosome biogenesis and function in development and disease.Development (Cambridge, England) · 2023
    Review
  16. Article
  17. Phenotypic mutations contribute to protein diversity and shape protein evolution.Protein science : a publication of the Protein Society · 2022
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Andrew V AnzaloneDepartment of Chemistry , Columbia University , New York , New York 10027 , United States.ORCID 0000-0003-2531-5589
Sakellarios ZairisDepartment of Systems Biology , Columbia University , New York , New York 10032 , United States.
Annie J LinDepartment of Chemistry , Columbia University , New York , New York 10027 , United States.
Raul RabadanDepartment of Systems Biology , Columbia University , New York , New York 10032 , United States.
Virginia W CornishDepartment of Chemistry , Columbia University , New York , New York 10027 , United States.
Columbia University · US

Funding

Topology of Cancer Evolution and HeterogeneityU54CA193313 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IAVARONE, ANTONIO, RABADAN, RAUL · 2015 to 2020
$10.4M
A Household Yeast Biosensor for CholeraR01AI110794 · NIAID · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI CORNISH, VIRGINIA W · 2015 to 2019
$3.2M
Clinical and Translational Science AwardTL1TR000082 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$732k
Unnatural Amino Acid Mutagenesis with Fluorescent Amino AcidsF30CA174357 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ANZALONE, ANDREW VITO · 2013 to 2016
$179k
NCATS NIH HHS TL1 TR000082NCI NIH HHS F30 CA174357NCI NIH HHS U54 CA193313NIAID NIH HHS R01 AI110794
6 · The paper itself

Abstract

RNA signals located downstream of stop codons in eukaryotic mRNAs can stimulate high levels of translational readthrough by the ribosome, thereby giving rise to functionally distinct C-terminally extended protein products. Although many readthrough events have been previously discovered in Nature, a broader description of the stimulatory RNA signals would help to identify new reprogramming events in eukaryotic genes and provide insights into the molecular mechanisms of readthrough. Here, we explore the RNA reprogramming landscape by performing in vitro translation selections to enrich RNA readthrough signals de novo from a starting randomized library comprising >10

Indexed as

Gene Expression Regulation3' Untranslated RegionsCodon, TerminatorCyclin-Dependent Kinase Inhibitor p15High-Throughput Nucleotide SequencingHumansIn Vitro TechniquesNectinsProtein BiosynthesisRibosomesRNARNA, Messenger3' Untranslated RegionsCDKN2B protein, humanCodon, TerminatorCyclin-Dependent Kinase Inhibitor p15NECTIN3 protein, humanNectinsRNARNA, Messenger

Identifiers

PMID30698415
PMCPMC6566847
OpenAlexW2912963651

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.