Evidence map›Paper›PMID 30697329›Full record

ArticlePlant methods2019

Multispectral imaging for presymptomatic analysis of light leaf spot in oilseed rape.

Charles Veys, Fokion Chatziavgerinos, Ali AlSuwaidi, James Hibbert, Mark Hansen, Gytis Bernotas, Melvyn Smith, Hujun Yin, Stephen Rolfe, Bruce Grieve

Abstract read
In one paragraph

Article in Plant methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Optical Imaging Resources for Crop Phenotyping and Stress Detection.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  7. Digital plant pathology: a foundation and guide to modern agriculture.Journal of plant diseases and protection : scientific journal of the German Phytomedical Society (DPG) · 2022
    Article
  8. Review
  9. Review
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Charles Veys1e-Agri Sensors Centre, School of Electrical and Electronic Engineering, University of Manchester, Sackville Street, Manchester, M1 3BU UK.ORCID 0000-0002-7135-6237
Fokion Chatziavgerinos2Department of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield, S10 2TN UK.
Ali AlSuwaidi1e-Agri Sensors Centre, School of Electrical and Electronic Engineering, University of Manchester, Sackville Street, Manchester, M1 3BU UK.
James Hibbert1e-Agri Sensors Centre, School of Electrical and Electronic Engineering, University of Manchester, Sackville Street, Manchester, M1 3BU UK.
Mark Hansen3Centre for Machine Vision, University of the West of England, Coldharbour Lane, Bristol, BS16 1QY UK.
Gytis Bernotas3Centre for Machine Vision, University of the West of England, Coldharbour Lane, Bristol, BS16 1QY UK.
Melvyn Smith3Centre for Machine Vision, University of the West of England, Coldharbour Lane, Bristol, BS16 1QY UK.
Hujun Yin1e-Agri Sensors Centre, School of Electrical and Electronic Engineering, University of Manchester, Sackville Street, Manchester, M1 3BU UK.
Stephen Rolfe2Department of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield, S10 2TN UK.
Bruce Grieve1e-Agri Sensors Centre, School of Electrical and Electronic Engineering, University of Manchester, Sackville Street, Manchester, M1 3BU UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe use of spectral imaging within the plant phenotyping and breeding community has been increasing due its utility as a non-invasive diagnostic tool. However, there is a lack of imaging systems targeted specifically at plant science duties, resulting in low precision for canopy-scale measurements. This study trials a prototype multispectral system designed specifically for plant studies and looks at its use as an early detection system for visually asymptomatic disease phases, in this case

resultsThe proposed method was able to detect light leaf spot infection with 92% accuracy when imaging entire oilseed rape plants from above, 12 days after inoculation and 13 days before the appearance of visible symptoms. False colour mapping of spectral vegetation indices was used to quantify disease severity and its distribution within the plant canopy. In addition, the structure of the plant was recorded using photometric stereo, with the output influencing regions used for diagnosis. The shape of the plants was also recorded using photometric stereo, which allowed for reconstruction of the leaf angle and surface texture, although further work is needed to improve the fidelity due to uneven lighting distributions, to allow for reflectance compensation.

conclusionsThe ability of active multispectral imaging has been demonstrated along with the improvement in time taken to detect light leaf spot at a high accuracy. The importance of capturing structural information is outlined, with its effect on reflectance and thus classification illustrated. The system could be used in plant breeding to enhance the selection of resistant cultivars, with its early and quantitative capability.

Indexed as

Disease detectionLight leaf spotMachine learningMultispectralNovelty detectionOilseed rapeOrientation effectsPhotometric stereoPreprocessingSupport vector machine

Identifiers

PMID30697329
PMCPMC6345015

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.