Evidence map›Paper›PMID 30695063›Full record

ArticlePLoS genetics2019

Heme peroxidase HPX-2 protects Caenorhabditis elegans from pathogens.

Yi Liu, Karan Gautam Kaval, Ambro van Hoof, Danielle A Garsin

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Rapid directed molecular evolution of fluorescent proteins in mammalian cells.Protein science : a publication of the Protein Society · 2022
    Article
  6. Article
  7. Article
  8. Innate immunity in C. elegans.Current topics in developmental biology · 2021
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yi LiuDepartment of Microbiology and Molecular Genetics, The University of Texas Health Science Center at Houston, Houston TX, United States of America.
Karan Gautam KavalDepartment of Microbiology and Molecular Genetics, The University of Texas Health Science Center at Houston, Houston TX, United States of America.ORCID 0000-0002-6850-3726
Ambro van HoofDepartment of Microbiology and Molecular Genetics, The University of Texas Health Science Center at Houston, Houston TX, United States of America.
Danielle A GarsinDepartment of Microbiology and Molecular Genetics, The University of Texas Health Science Center at Houston, Houston TX, United States of America.ORCID 0000-0002-6551-2600
The University of Texas MD Anderson Cancer Center · USThe University of Texas Health Science Center at Houston · US

Funding

The Role of Reactive Oxygen Species in Mucosal Innate ImmunityR01AI076406 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI GARSIN, DANIELLE A · 2009 to 2019
$3.2M
RNA decay and processing activities of the RNA exosomeR01GM099790 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI VAN HOOF, AMBRO · 2012 to 2020
$2.6M
Insight Into The RNA Processing And Decay Pathways Critical For Proper Neuronal Development And Function Through Focus On Mutations That Cause Pontocerebellar HypoplasiaR01GM130147 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI CORBETT, ANITA H., VAN HOOF, AMBRO · 2018 to 2021
$1.4M
NIAID NIH HHS R01 AI076406NIGMS NIH HHS R01 GM099790NIGMS NIH HHS R01 GM130147
6 · The paper itself

Abstract

Heme-containing peroxidases are important components of innate immunity. Many of them functionally associate with NADPH oxidase (NOX)/dual oxidase (DUOX) enzymes by using the hydrogen peroxide they generate in downstream reactions. Caenorhabditis elegans encodes for several heme peroxidases, and in a previous study we identified the ShkT-containing peroxidase, SKPO-1, as necessary for pathogen resistance. Here, we demonstrated that another peroxidase, HPX-2 (Heme-PeroXidase 2), is required for resistance against some, but not all pathogens. Tissue specific RNA interference (RNAi) revealed that HPX-2 functionally localizes to the hypodermis of the worm. In congruence with this observation, hpx-2 mutant animals possessed a weaker cuticle structure, indicated by higher permeability to a DNA dye, but exhibited no obvious morphological defects. In addition, fluorescent labeling of HPX-2 revealed its expression in the pharynx, an organ in which BLI-3 is also present. Interestingly, loss of HPX-2 increased intestinal colonization of E. faecalis, suggesting its role in the pharynx may limit intestinal colonization. Moreover, disruption of a catalytic residue in the peroxidase domain of HPX-2 resulted in decreased survival on E. faecalis, indicating its peroxidase activity is required for pathogen resistance. Finally, RNA-seq analysis of an hpx-2 mutant revealed changes in genes encoding for cuticle structural components under the non-pathogenic conditions. Under pathogenic conditions, genes involved in infection response were differentially regulated to a greater degree, likely due to increased microbial burden. In conclusion, the characterization of the heme-peroxidase, HPX-2, revealed that it contributes to C. elegans pathogen resistance through a role in generating cuticle material in the hypodermis and pharynx.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsEnterococcus faecalisHemeHydrogen PeroxideImmunity, InnateOxidation-ReductionOxidoreductasesPeroxidasePharynxRNA InterferenceSequence Homology, Amino AcidBli-3 protein, C elegansCaenorhabditis elegans ProteinsHemeHPX-2 protein, C elegansHydrogen PeroxideOxidoreductasesPeroxidaseSKPO-1 protein, C elegans

Identifiers

PMID30695063
PMCPMC6368334
OpenAlexW2911777499

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.