Evidence map›Paper›PMID 30695059›Full record

ArticlePloS one2019

Label-free classification of cells based on supervised machine learning of subcellular structures.

Yusuke Ozaki, Hidenao Yamada, Hirotoshi Kikuchi, Amane Hirotsu, Tomohiro Murakami, Tomohiro Matsumoto, Toshiki Kawabata, Yoshihiro Hiramatsu, Kinji Kamiya, Toyohiko Yamauchi and 6 more

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Review
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  6. On the use of deep learning for phase recovery.Light, science & applications · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yusuke OzakiSecond Department of Surgery, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.
Hidenao YamadaCentral Research Laboratory, Hamamatsu Photonics K.K., Hamamatsu, Shizuoka, Japan.ORCID 0000-0001-7091-9053
Hirotoshi KikuchiSecond Department of Surgery, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.
Amane HirotsuSecond Department of Surgery, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.
Tomohiro MurakamiSecond Department of Surgery, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.
Tomohiro MatsumotoSecond Department of Surgery, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.
Toshiki KawabataSecond Department of Surgery, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.
Yoshihiro HiramatsuSecond Department of Surgery, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.
Kinji KamiyaSecond Department of Surgery, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.
Toyohiko YamauchiCentral Research Laboratory, Hamamatsu Photonics K.K., Hamamatsu, Shizuoka, Japan.
Kentaro GotoCentral Research Laboratory, Hamamatsu Photonics K.K., Hamamatsu, Shizuoka, Japan.
Yukio UedaCentral Research Laboratory, Hamamatsu Photonics K.K., Hamamatsu, Shizuoka, Japan.
Shigetoshi OkazakiDepartment of Medical Spectroscopy, Institute for Medical Photonics Research, Preeminent Medical Photonics Education and Research Center, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.ORCID 0000-0001-5041-6301
Masatoshi KitagawaDepartment of Molecular Biology, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.
Hiroya TakeuchiSecond Department of Surgery, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.
Hiroyuki KonnoHamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It is demonstrated that cells can be classified by pattern recognition of the subcellular structure of non-stained live cells, and the pattern recognition was performed by machine learning. Human white blood cells and five types of cancer cell lines were imaged by quantitative phase microscopy, which provides morphological information without staining quantitatively in terms of optical thickness of cells. Subcellular features were then extracted from the obtained images as training data sets for the machine learning. The built classifier successfully classified WBCs from cell lines (area under ROC curve = 0.996). This label-free, non-cytotoxic cell classification based on the subcellular structure of QPM images has the potential to serve as an automated diagnosis of single cells.

Indexed as

Cell LineHCT116 CellsHep G2 CellsHumansLeukocytesPattern Recognition, AutomatedSingle-Cell AnalysisSupervised Machine Learning

Identifiers

PMID30695059
PMCPMC6350988

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.