Evidence map›Paper›PMID 30695048›Full record

ArticlePloS one2019

Viral loads correlate with upregulation of PD-L1 and worse patient prognosis in Epstein-Barr Virus-associated gastric carcinoma.

Atsuhito Nakayama, Hiroyuki Abe, Akiko Kunita, Ruri Saito, Teru Kanda, Hiroharu Yamashita, Yasuyuki Seto, Shumpei Ishikawa, Masashi Fukayama

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 48 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Prognostic role ofHeliyon · 2024
    Article
  8. Review
  9. Review
  10. Review
  11. EBV and HPV Infections in Colorectal Cancer and Their Effect on P53 and P16 Protein Expression.International journal of molecular and cellular medicine · 2023
    Article
  12. Epstein-barr virus/Iranian journal of microbiology · 2022
    Article
  13. Signaling pathways and therapeutic interventions in gastric cancer.Signal transduction and targeted therapy · 2022
    Review
  14. Checkpoint CD47 expression in classical Hodgkin lymphoma.British journal of haematology · 2022
    Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Atsuhito NakayamaDepartment of Pathology, Graduate School of Medicine, the University of Tokyo, Tokyo, Japan.
Hiroyuki AbeDepartment of Pathology, Graduate School of Medicine, the University of Tokyo, Tokyo, Japan.
Akiko KunitaDepartment of Pathology, Graduate School of Medicine, the University of Tokyo, Tokyo, Japan.
Ruri SaitoDepartment of Pathology, Graduate School of Medicine, the University of Tokyo, Tokyo, Japan.
Teru KandaDepartment of Microbiology, Tohoku Medical and Pharmaceutical University, Sendai, Japan.
Hiroharu YamashitaDepartment of Gastrointestinal Surgery, Graduate School of Medicine, the University of Tokyo, Tokyo, Japan.
Yasuyuki SetoDepartment of Gastrointestinal Surgery, Graduate School of Medicine, the University of Tokyo, Tokyo, Japan.
Shumpei IshikawaDepartment of Pathology, Graduate School of Medicine, the University of Tokyo, Tokyo, Japan.
Masashi FukayamaDepartment of Pathology, Graduate School of Medicine, the University of Tokyo, Tokyo, Japan.ORCID 0000-0002-0460-064X
The University of Tokyo · JPTohoku Medical and Pharmaceutical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epstein-Barr virus (EBV)-associated gastric carcinoma (EBVaGC), one of four major gastric cancer types, consists of clonal growth of EBV-infected epithelial cells. However, the significance of viral loads in each tumor cell has not been evaluated. EBV-DNA is stably maintained in episomal form in the nucleus of each cancer cell. To estimate EBV copy number per genome (EBV-CN), qPCR of viral EBNA1 and host GAPDH, standardized by Namalwa DNA (one copy/genome), was applied to the formalin-fixed paraffin embedded (FFPE) surgically resected EBVaGC specimens (n = 43) and EBVaGC cell lines (SNU-719 and NCC-24). In surgical specimens, the cancer cell ratio (CCR) was determined with image analysis, and EBV-CN was obtained by adjusting qPCR value with CCR. Fluorescent in situ hybridization (FISH) was also applied to the FFPE sections using the whole EBV-genome as a probe. In surgical specimens, EBV-CN obtained by qPCR/CCR was between 1.2 and 185 copies with a median of 9.9. EBV-CN of SNU-719 and NCC-24 was 42.0 and 1.1, respectively. A linear correlation was observed with qPCR/CCR data up to 20 copies/genome (40 signals/nucleus), the limit of FISH analysis. In addition, substantial variation in the number of EBV foci was observed. Based on qPCR/CCR, high EBV-CN (>10 copies) correlated with PD-L1 expression in cancer cells (P = 0.015), but not with other pathological indicators. Furthermore, EBVaGC with high EBV-CN showed worse disease-specific survival (P = 0.041). Our findings suggest that cancer cell viral loads may contribute to expression of the immune checkpoint molecule and promotion of cancer progression in EBVaGC.

Indexed as

Up-RegulationAgedB7-H1 AntigenCell Line, TumorDisease ProgressionEpstein-Barr Virus InfectionsEpstein-Barr Virus Nuclear AntigensFemaleGene DosageHerpesvirus 4, HumanHumansIn Situ Hybridization, FluorescenceMaleMiddle AgedPrognosisStomach NeoplasmsB7-H1 AntigenCD274 protein, humanEBV-encoded nuclear antigen 1Epstein-Barr Virus Nuclear Antigens

Identifiers

PMID30695048
PMCPMC6350976
OpenAlexW2914887598

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.