ArticleFrontiers in plant science2018
Genome-Wide Association Studies for Pasmo Resistance in Flax (
Article in Frontiers in plant science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
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Who cites it
42 citing papers in PubMed, 80 citations in OpenAlex.
- A benchmarking of genomic selection models for predicting grain-yield related traits using haplotype-based and genome-wide association study-based markers in rice.The plant genome · 2026Article
- Genomic selection for seed yield enhances flax breeding efficiency.Molecular breeding : new strategies in plant improvement · 2026Article
- Genome-Wide Association Study Reveals Novel QTNs and Candidate Genes Implicated in Resistance to Northern Corn Leaf Blight in Maize (International journal of molecular sciences · 2025Article
- Genome-wide association analyses for revealing QTN, QTN-by-environment and QTN-by-QTN interactions in soybean phenology.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Multi-locus genome wide association study uncovers genetics of fresh seed dormancy in groundnut.BMC plant biology · 2024Article
- New Insights into the Genetic Basis of Lysine Accumulation in Rice Revealed by Multi-Model GWAS.International journal of molecular sciences · 2024Article
- Multi-omics analysis reveals novel loci and a candidate regulatory gene of unsaturated fatty acids in soybean (Glycine max (L.) Merr).Biotechnology for biofuels and bioproducts · 2024Article
- Genome-wide association study and genomic selection of flax powdery mildew in Xinjiang Province.Frontiers in plant science · 2024Article
- History and prospects of flax genetic markers.Frontiers in plant science · 2024Review
- Medicinal Plants for the Treatment of Neuropathic Pain: A Review of Randomized Controlled Trials.Current pharmaceutical biotechnology · 2024Review
- The Genetic Dissection of Nitrogen Use-Related Traits in Flax (International journal of molecular sciences · 2023Article
- Overview and Management of the Most Common Eukaryotic Diseases of Flax (Plants (Basel, Switzerland) · 2023Review
- Review
- Genome-wide association studies using multi-models and multi-SNP datasets provide new insights into pasmo resistance in flax.Frontiers in plant science · 2023Article
- Genetic dissection of thousand-seed weight in linseed (Frontiers in plant science · 2023Article
- Diversity ofFrontiers in nutrition · 2023Review
- Multi-locus genome-wide association study of fusarium head blight in relation to days to anthesis and plant height in a spring wheat association panel.Frontiers in plant science · 2023Article
- Identification of new potential molecular actors related to fiber quality in flax through Omics.Frontiers in plant science · 2023Article
- Identification of major genomic regions for soybean seed weight by genome-wide association study.Molecular breeding : new strategies in plant improvement · 2022Article
- Insights into the Genetic Architecture and Genomic Prediction of Powdery Mildew Resistance in Flax (International journal of molecular sciences · 2022Article
Corrections and comments
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Authors and funding
9 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Pasmo is one of the most widespread diseases threatening flax production. To identify genetic regions associated with pasmo resistance (PR), a genome-wide association study was performed on 370 accessions from the flax core collection. Evaluation of pasmo severity was performed in the field from 2012 to 2016 in Morden, MB, Canada. Genotyping-by-sequencing has identified 258,873 single nucleotide polymorphisms (SNPs) distributed on all 15 flax chromosomes. Marker-trait associations were identified using ten different statistical models. A total of 692 unique quantitative trait nucleotides (QTNs) associated with 500 putative quantitative trait loci (QTL) were detected from six phenotypic PR datasets (five individual years and average across years). Different QTNs were identified with various statistical models and from individual PR datasets, indicative of the complementation between analytical methods and/or genotype × environment interactions of the QTL effects. The single-locus models tended to identify large-effect QTNs while the multi-loci models were able to detect QTNs with smaller effects. Among the putative QTL, 67 had large effects (3-23%), were stable across all datasets and explained 32-64% of the total variation for PR in the various datasets. Forty-five of these QTL spanned 85 resistance gene analogs including a large toll interleukin receptor, nucleotide-binding site, leucine-rich repeat (TNL) type gene cluster on chromosome 8. The number of QTL with positive-effect or favorite alleles (NPQTL) in accessions was significantly correlated with PR (
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